PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 305aa    MW: 33409 Da    PI: 4.4547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.7e-1295139347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++++   +G+g+W++I+r+   +Rt+ q+ s+ qky
  Sopen09g002460.1  95 AWTEEEHRSFLRGLDIYGKGDWRSISRHCVITRTAMQVASHAQKY 139
                       6***************************9989************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0043859IPR001005SANT/Myb domain
SuperFamilySSF466899.66E-71061IPR009057Homeodomain-like
CDDcd001671.15E-41257No hitNo description
PROSITE profilePS500904.7861257IPR017877Myb-like domain
PROSITE profilePS5129416.87588144IPR017930Myb domain
SuperFamilySSF466892.28E-1591144IPR009057Homeodomain-like
SMARTSM007171.1E-992142IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-1494142IPR006447Myb domain, plants
CDDcd001671.23E-995140No hitNo description
Gene3DG3DSA:1.10.10.607.6E-1095141IPR009057Homeodomain-like
PfamPF002492.4E-1095139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSTDRTWNSS FWSQEEDKIF ENILGIHFND NNLLRKMEEA LPGKTVDEIK DHYNILLEDI  60
DAIDFGGAPL PNYAEIQSNA NENMKADVQW RRGAAWTEEE HRSFLRGLDI YGKGDWRSIS  120
RHCVITRTAM QVASHAQKYF KRVEANKKGN RRRRAKPSVL DITGVDAELG GTSQVPITAD  180
MIDPVCEGSQ AVPNTSIESM CYRESTNAEQ MTAVVGGENA FVNVDAGSGT SSHSISRIGS  240
ELEALLSQPM DEDNDFNLIF DVGMEPTSDA GIAPTAQTGM SGYAAAGEAS AQLPPFSPSS  300
YFGAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888763.10.0transcription factor SRM1-like
TrEMBLA0A3Q7HY870.0A0A3Q7HY87_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000043960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-41MYB family protein