PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g002440.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 305aa MW: 34042.8 Da PI: 4.2626

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g002440.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.8	2.2e-12	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++++ + +G g+W++I+r+ +Rt+ q+ s+ qk+ Sopen09g002440.1 95 PWTEEEHRSFLRGLEIYGRGDWRSISRHCVITRTGIQVASHAQKF 139 8*************************9989*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1	8	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.24E-6	10	61	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.414	12	57	IPR017877	Myb-like domain
CDD	cd00167	0.00547	12	57	No hit	No description
PROSITE profile	PS51294	17.457	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	3.24E-15	91	144	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-10	92	142	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.8E-14	93	142	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.3E-10	94	136	IPR009057	Homeodomain-like
CDD	cd00167	9.19E-10	95	140	No hit	No description
Pfam	PF00249	6.9E-10	95	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSTNKTCNSS FWTREEDKIF ENTLAIYFNN NNLLRMMEEA LPQKSLQDIK DHYNILLEDI 60 NAIDSGCVPL HNYPEMQSNA NQNLKADAKW RRGTPWTEEE HRSFLRGLEI YGRGDWRSIS 120 RHCVITRTGI QVASHAQKFF KRLEAANKGE RRASILDITS ADAEGAGTSQ VPKTVDMIGP 180 ACEGSQVVPN MSPQESTNAE QQMTTVAEDI DDLMTELEDA TAASCGTYSH PITRIGSELE 240 ALLAEPMDVD NTISSIFDDE KTPASRYAAV EAAPPYLPPF TPSSNTTVDD EGIFDTDDLF 300 IDQMF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-180	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088091.1	0.0	transcription factor SRM1-like
Swissprot	Q9FNN6	9e-43	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A3Q7ISF0	0.0	A0A3Q7ISF0_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400004392	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4454	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-45	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]