PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g031590.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 378aa MW: 42472.9 Da PI: 7.0391

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g031590.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.3	1.1e-31	50	154	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ Sopen08g031590.1 50 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDTNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEl 142 89*************************966778999***********************************************666999 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + +l++ ++r+ Sopen08g031590.1 143 GKDRLFIDWRRR 154 999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-41	41	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-29	47	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-26	48	137	No hit	No description
PROSITE profile	PS50863	14.579	50	155	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-29	50	154	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-22	50	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MNFFSDGRGF NDQGPFSHPD FSHQQRSTTN SSDMADEVGE SNTIEREHMF DKVVTPSDVG 60 KLNRLVIPKQ HAEKYFPLDS STNEKGLLLN FEDTNGKPWR FRYSYWNSSQ SYVMTKGWSR 120 FVKEKKLDAG DIVSFQRGVG ELGKDRLFID WRRRPNAPDH LHFMTNHHLH NNLYRSNIQY 180 PAAAWDRPLF LQPPDQSHLQ YSLEPATGSM SHQQQSHGSS PNYYYDTCNF INSRTTVVNG 240 NPCPSGSVVY LRSGSAQVPQ QAGLMQLRGH SNSSTSGRVV EPVVFDSVPV VQGKAAAKRF 300 RLFGVNMDCP ISDSCEITSS SSSLPNPAAT TTYSHVPQFS SLSFRTSNDY DTNRPAATEE 360 ESFDKGKASM SLNLDLDI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MNFFSDGRGF NDQGPFSHPD FSHQQRSTTN SSDMADEVGE SNTIEREHMF DKVVTPSDVG  60
KLNRLVIPKQ HAEKYFPLDS STNEKGLLLN FEDTNGKPWR FRYSYWNSSQ SYVMTKGWSR  120
FVKEKKLDAG DIVSFQRGVG ELGKDRLFID WRRRPNAPDH LHFMTNHHLH NNLYRSNIQY  180
PAAAWDRPLF LQPPDQSHLQ YSLEPATGSM SHQQQSHGSS PNYYYDTCNF INSRTTVVNG  240
NPCPSGSVVY LRSGSAQVPQ QAGLMQLRGH SNSSTSGRVV EPVVFDSVPV VQGKAAAKRF  300
RLFGVNMDCP ISDSCEITSS SSSLPNPAAT TTYSHVPQFS SLSFRTSNDY DTNRPAATEE  360
ESFDKGKASM SLNLDLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-67	45	157	3	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-67	45	157	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888271.1	0.0	B3 domain-containing transcription factor NGA1-like isoform X2
Swissprot	O82799	6e-78	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	M1AWD5	0.0	M1AWD5_SOLTU; Uncharacterized protein
STRING	Solyc08g083400.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	7e-74	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]