PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g031120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32697.3 Da PI: 9.3086 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll ++++q+G g+W++ ++ g+ R++k+c++rw +yl Sopen08g031120.1 14 KGPWSTKEDLLLTNYINQYGEGQWRSLPKNAGLLRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l Sopen08g031120.1 67 RGNFSEDEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.959 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.10E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.187 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.34E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRAPCCAKE GLRKGPWSTK EDLLLTNYIN QYGEGQWRSL PKNAGLLRCG KSCRLRWVNY 60 LKPGIKRGNF SEDEEDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSTG 120 IEPKPHKNLT KLKEKSRKQT KKEKSRKEVG KKSNDEKFKG QIVQVEKIKV FAPKPIRISC 180 GILRNNSFEN DTLSTTTCSS NSNFEKVDDG KDKEKEVKLF PRELDFDELL EGGGFYDEFL 240 MGESCNFSNK VEMNDNMVEK VYEEYLLLLS EIQEDQTDQK FSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 12 | 118 | 5 | 110 | B-MYB |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084650.1 | 0.0 | transcription factor MYB7-like | ||||
Swissprot | Q42379 | 8e-65 | MYB7_ARATH; Transcription factor MYB7 | ||||
TrEMBL | A0A3Q7HV65 | 0.0 | A0A3Q7HV65_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g082890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 4e-65 | myb domain protein 6 |