PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g030990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 691aa    MW: 79968.8 Da    PI: 6.5457
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g030990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK55.98.2e-18518565350
            RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                       ++++ +dl+++F++++ dAAk+L+++ ++LKr CR+yGI+RWP  k k
  Sopen08g030990.1 518 DSVNYDDLKQHFDKNLSDAAKSLQISRSTLKRLCRKYGIRRWPLSKRK 565
                       678899*************************************86655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.527504589IPR003035RWP-RK domain
PfamPF020421.8E-17520566IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.603.1E-6529556IPR009057Homeodomain-like
SuperFamilySSF542771.96E-17597682No hitNo description
Gene3DG3DSA:3.10.20.2404.4E-17599682No hitNo description
SMARTSM006668.8E-12601683IPR000270PB1 domain
PROSITE profilePS5174518.634601683IPR000270PB1 domain
PfamPF005641.2E-13602681IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MMEQIGKNQY PMINDDVYEV YTSSEFMNYI GEPLSCSEER SNFHLMVFWT NNQPQSNSVK  60
EKIKLALQRI ETSQVILLQF WGLENIEGRK FLSTSGQPFG LRYLYKGLCW YRKHCQGYKY  120
SVDKGENHEQ GMEKTHLFGP PTRVFQQKLP ESSTHVGYYT NEEFPMRDHV LQCGVRTYLA  180
LPVFEPVEKN CIGVIELVTV WKGGYLTCEV ERVLNPLEAV DLKCPKIFLN KDRKVQAEKH  240
NEGEEFKRML KIVRETHKLP FIRVWIPCVN LEMDHNGMYV GCTELAMSAS NEVYFVADEE  300
MDANNHVYDD YYYDDMLCFR DISKLQPLQK DQGVVGKAFS SGKLCYCKNI TEFSIIEYPL  360
VHYARWCGLT TSFAICLKSR DDAYILELFL PPDNGDTNML LGSILTTMGQ HFQNFKFASG  420
QELGNDSSVQ VVKASSDKNV DYFHIYQTRD STFMPEVLHV EDSRNQLMEG NENHIEKEDR  480
KQSMVQSNVL SIDSHVISEK QCVSVSHLQK ESRTRTKDSV NYDDLKQHFD KNLSDAAKSL  540
QISRSTLKRL CRKYGIRRWP LSKRKKSSES DQQTLTMVSK KNKSIGSETT TQKDHESCSS  600
SFTVKATFGD DMMKFKLYTF SRKDDLDNEV SKRLKLPIGR FRINYMDEDN DWIWIACDDD  660
LSDCLNNAQS LGNNTIKMLV LPAAINHHLE L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774599.10.0protein NLP7-like isoform X1
TrEMBLM1AWJ60.0M1AWJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000319410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13879911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-85NIN like protein 7