PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g030250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 37590.5 Da PI: 4.8587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 136 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Sopen08g030250.1 136 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 186 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.77E-32 | 136 | 194 | No hit | No description |
SMART | SM00380 | 3.5E-37 | 137 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 137 | 194 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.63 | 137 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-12 | 137 | 186 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-30 | 137 | 194 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDQQTMLSSG VKYTEHRKQI TMVRPAPPET FTGRRRSSEM NAAGPRVVRI TVTDADATDS 60 SSDEGEQGFY GRQRVRKFVN EVRIEQSSNC NGSVNGVLRN GSSSETAPVV AAAPKRRKKT 120 AGATTAASKL KVNHVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDHA 180 AIQLRGPDAL TNFATPPATK TSCSGYNSGE ESHNDQRSPK SVLRCASTSF DESQNNEEAE 240 AESLSILPSD IKDKNDISMS ENFCDLPPFE SFFPDDLFQF ENPITISDLF FEPDTLPDCN 300 NMLFGSSTTD YSFGSSSWPE EDFFQDFGDV FGSDPLVAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 136 | 193 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-19 | 136 | 193 | 4 | 62 | ATERF1 |
3gcc_A | 3e-19 | 136 | 193 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083876.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A3Q7HUN9 | 0.0 | A0A3Q7HUN9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g081960.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-47 | cytokinin response factor 2 |