PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g029910.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 306aa    MW: 34974 Da    PI: 5.4533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g029910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.5e-28130188259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +++ ++++tY+ eHnh+
  Sopen08g029910.1 130 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTENGTFIVTYTAEHNHS 188
                       79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-30115190IPR003657WRKY domain
PROSITE profilePS5081131.559124190IPR003657WRKY domain
SuperFamilySSF1182902.35E-25126190IPR003657WRKY domain
SMARTSM007741.0E-32129189IPR003657WRKY domain
PfamPF031065.6E-24131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MMVMDWGLQA VVIGSSSSYS ANNIDFSPKL DFQESDHQYL SFSHEMKKEF FISDELEELY  60
KPFYHVDGGQ NILMGSSISL IPKEIIKEEK REEEQQQVVA PTSTYVPKYK KRKNEQKRVV  120
LQLKADDLSS DKWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVEQS CTENGTFIVT  180
YTAEHNHSQP TRRNSLAGTI KSKFPNSKNT NIKKNIVKDE KISSPHGSTS NNNLGFSPET  240
LMIDEFQEIE MNDHEEIKNM FEGSDENECV SIQEMFDGDF FAGLEDIHDG FTSSFGCNNS  300
TSPFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17118190274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084638.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLA0A3Q7IQH10.0A0A3Q7IQH1_SOLLC; Uncharacterized protein
STRINGSolyc08g081610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-35WRKY family protein