PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g028900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 586aa    MW: 65099 Da    PI: 8.4294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g028900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-1857100448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eEd ll ++v+++ g++Wk+Ia++++ gRt+ qc +rwqk+l
  Sopen08g028900.1  57 WTEEEDNLLTEVVERFKGRNWKRIAECLN-GRTDVQCLHRWQKVL 100
                       *****************************.************986 PP
2Myb_DNA-binding62.58.3e-20106152148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd+l++++v+++G + W++Ia+ ++ gR +kqc++rw+++l
  Sopen08g028900.1 106 KGPWTKEEDDLIIELVEKHGCKKWSSIANSLP-GRIGKQCRERWHNHL 152
                       79******************************.*************97 PP
3Myb_DNA-binding53.65.2e-17158202147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++WT++E++ l ++++++G++ W++Ia+ ++ gRt++ +k++w++ 
  Sopen08g028900.1 158 KDAWTEQEELVLCHYHQLYGNK-WAKIAKFLP-GRTDNAIKNHWNST 202
                       679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.93847100IPR017930Myb domain
SMARTSM007173.0E-1453102IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-1556110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-2357112IPR009057Homeodomain-like
PfamPF002491.4E-1557100IPR001005SANT/Myb domain
CDDcd001673.73E-1457100No hitNo description
PROSITE profilePS5129431.612101156IPR017930Myb domain
SuperFamilySSF466891.31E-32103199IPR009057Homeodomain-like
SMARTSM007172.1E-17105154IPR001005SANT/Myb domain
PfamPF002493.4E-19106152IPR001005SANT/Myb domain
CDDcd001678.48E-17108152No hitNo description
Gene3DG3DSA:1.10.10.602.3E-27113160IPR009057Homeodomain-like
SMARTSM007171.3E-15157205IPR001005SANT/Myb domain
PROSITE profilePS5129421.343157207IPR017930Myb domain
PfamPF002492.4E-15158202IPR001005SANT/Myb domain
CDDcd001679.15E-12160200No hitNo description
Gene3DG3DSA:1.10.10.601.5E-22161207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MIQVKEEAPT LDIGGFISCS SFSDSSYEAS TPRCSSEPGS SCRRSSGPTK RSSQAGWTEE  60
EDNLLTEVVE RFKGRNWKRI AECLNGRTDV QCLHRWQKVL NPELVKGPWT KEEDDLIIEL  120
VEKHGCKKWS SIANSLPGRI GKQCRERWHN HLDPTITKDA WTEQEELVLC HYHQLYGNKW  180
AKIAKFLPGR TDNAIKNHWN STLKKRLNLN LLSRLVPDIK SEGSPDFSTH KKNMEIKKHP  240
TQAHNAETVF LSEQTGVGNA ADACPTDLRI GSANSPQNGL HKGTSSFGTC KSSEQKERDL  300
IKQFGGIQFV NAEILPIGET DKQCQSTLSL TKISYPLLDS SLDARLDPSH NTRWSSSQVE  360
AVRPTSFGSM YESPKRSRYD AVNDPDHDFL SLSLAAFTEV SYGNKKNKTY DTQYSLALNQ  420
PGRLYYEPPK VKDLMISSMD ENLSKDNFTG QHHGHPFCST PPSLKLTVSA NGSSPESVLR  480
NSAMSYTKTP SIIRKKTSRV AEASGHSSCT GSTTPMHFLG SVPDREDSSN LKDRISGCKR  540
SVSGKSLGRR LEYAFDMERD SSRSCTPVSA VPPCGLTLGA NTMLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-65572079159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-65572079159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376ESPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084866.10.0transcription factor MYB3R-4-like
RefseqXP_015084867.10.0transcription factor MYB3R-4-like
TrEMBLA0A3Q7HVU00.0A0A3Q7HVU0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000078990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-76Homeodomain-like protein