PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g028730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 679aa    MW: 75415.9 Da    PI: 6.082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g028730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.88.8e-1312976641374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++c+ea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+kf
  Sopen08g028730.1 297 LISLLVSCVEAIGSRNVTGVNQLIARLGQLASPRGSPVSRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDNSTALRLLNQVSPIPKF 388
                       5799*****************************************************************8.5678888999************ PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rl
  Sopen08g028730.1 389 IHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-VVDRL 476
                       ********************************************************....9**************************.7**** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                       ed++l++L+vk+gE++aVn+vlq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds++ +lp +s
  Sopen08g028730.1 477 EDVRLWMLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIAFSLPLDS 567
                       ***************************966655444..79***************************************************** PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369
                        +rik+E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + yrv+   +++++l+l W d+pL +
  Sopen08g028730.1 568 PARIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELLQSQMLLKMYSCEDYRVKkqgNDDAALTLSWLDQPLCT 659
                       *******98.********************************************************888****5444589999********** PP

              GRAS 370 vSaWr 374
                       vSaW+
  Sopen08g028730.1 660 VSAWT 664
                       ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.284271641IPR005202Transcription factor GRAS
PfamPF035143.1E-128297664IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL  60
SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK DEFWEKGRSL KRYAEQGCID  120
DESCMSRAKR KKSNRKSGDS SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA  180
APFSFSCSGE EESACYVPNE VISPPLPMSN NPWIESVVTE ITNFGDKNVS TSQDLAREAS  240
VSSASLDSHG LVLRPNENLG EHEVGNGSSL PNPNDRGEVV TAHNGHNNHR EEDAAELISL  300
LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII  360
PPRDLDRLDD DNSTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR  480
LWMLHVKEGE SVAVNCVLQM HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS  540
LEARLVNSLR YYAAVFDSIA FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG  600
KWRKLMEQGG FRCTGITERE LLQSQMLLKM YSCEDYRVKK QGNDDAALTL SWLDQPLCTV  660
SAWTPIDAAG SSSSYYQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7329066512380Protein SCARECROW
5b3h_A2e-7329066511379Protein SCARECROW
5b3h_D2e-7329066511379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085139.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3Q7HTU50.0A0A3Q7HTU5_SOLLC; Uncharacterized protein
STRINGSolyc08g080400.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein