PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g028640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18850.3 Da PI: 5.0073 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.8e-16 | 8 | 55 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g Sopen08g028640.1 8 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 55 79**9.55.6*********843...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.59E-16 | 6 | 63 | No hit | No description |
PROSITE profile | PS51032 | 19.414 | 7 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-27 | 7 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 8 | 55 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-25 | 8 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 8 | 64 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGGKHAIFRG IRCRSGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDVAA MALKGNDAVI 60 NFPGNINSYP SLPPSPAAAD IRKAAATAAA LMKIESGETT LGTQPGTDEH QSLGNVHMME 120 TRDHEYIDEE ALFDMPNLLV DMAEAMMVSP PRMSSPRSDD SPGHSDAENL WSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 1 | 67 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-178 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084540.1 | 1e-127 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 3e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A3Q7HTS9 | 1e-102 | A0A3Q7HTS9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g080290.2.1 | 1e-103 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-34 | ERF family protein |
Publications ? help Back to Top | |||
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