PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g028510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 377aa MW: 40459.4 Da PI: 8.7263 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.4 | 1.5e-35 | 70 | 173 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a+++i+e+tgt++ +a ++ +++ + +s++ s+ + + Sopen08g028510.1 70 PPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQSIIEATGTGTVPAIAVsVNGTLKIPTSSPASNPEIDE 162 789*************************************************************77777444322222222222222222222 PP TCP 94 aakskksqksa 104 ++++k+++ks+ Sopen08g028510.1 163 NNPQKRRRKSS 173 22222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-29 | 75 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.584 | 76 | 130 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSSFHDPDDD CGTSELSNGA AGDLNDRKMD GHAVADDKKL VFSAMKEEPF DSDHHTLVPS 60 MPMPVATAAP PRRSSTKDRH TKVEGRGRRI RIPATCAARI FQLTRELGHK SDGETVRWLL 120 EHAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNPEI DENNPQKRRR KSSNSEFIDV 180 GSLNRNAANV SQFAPVTTTP ATITTAPPPG LVPIWGMSNG GTMVPSNAIW MIPATVPPAQ 240 VNVTNNNNNN NNVVLQYPQL WTPVFNLATR PIPSFVTAPT VAATNNTNGP PAIMIAGPLS 300 MNNGAATTTG PKIGSNKSSM APASLSSSTD KNNDKNVVKP HMLRDFSLEI YDRKELQLMS 360 RSGNHKQETQ VTSSERS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00316 | DAP | Transfer from AT2G45680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083651.1 | 0.0 | transcription factor TCP19-like | ||||
TrEMBL | A0A3Q7HTQ8 | 0.0 | A0A3Q7HTQ8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g080150.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13731 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 8e-56 | TCP family protein |