PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g027270.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 701aa MW: 76606.2 Da PI: 6.1608

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g027270.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	280.4	5.3e-86	340	700	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+ + + ++ lpp++ ++ + + ++ a+k+fse+sP+++f + Sopen08g027270.1 340 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPSRRAAFYIKEALQLPFLL--PCTSTFLPPRSPTPFDCVLKMDAYKAFSEISPLIQFMN 430 57899999999***********************************99998..566666899999999******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle. 187 +t NqaIlea+ +e++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+ ++e L++fA+ g++fe +v+ ++++ Sopen08g027270.1 431 FTSNQAILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSVEIGIMHESLTQFANDAGIRFELEVINLDSFDp 523 *********************************************************************************97775541 PP GRAS 188 .dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 + l++Lr ++ Ea+a+n+ + + + + +s +L+++k+lsPkvvv e+ +++ + ++ +++++al+yy +l+ s++a + Sopen08g027270.1 524 kSYPLSTLRSSECEAIAINFPIWSISSC--PFAFPS----LLHCMKQLSPKVVVSLERGCERIELPLKHHLIHALQYYETLLASIDAA-NITP 609 155678999999****99655554..666666....*****************************************666.4677 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 + +k+Er l++++i+n++ + ++ ++ Wr+ + +aGF+pv++s+ ++ qa+++++++++ g++v++++ slvl+Wk+++L+s+ Sopen08g027270.1 610 DIGKKIERSLFQPSIENMILGRLRS----SDRMPPWRNLFASAGFSPVAFSNMTEIQAECVVKRTQVGGFHVQKRQTSLVLCWKQQELLSAVT 698 9999************99888....78899********************************************************* PP GRAS 373 Wr 374 Wr Sopen08g027270.1 699 WR 700 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.277	312	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-83	340	700	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MIVIPQSNNL PAKGVLGVSG FVPSISSSSS PEASICKKDA NFTRNEPVSV LDTRSPSPSA 60 SSSSCSYGAQ HGGNTAVPGV GSGKTDGRKE ELVTELEPFT VGLEPEKSVL GFGDLDNLLP 120 EFAGSDQSFL RWISGDLEDP SVSLKQLLNG DLGCGVSLQS SGFEVSATGS LAHSDNVSFS 180 GSNICLNANI EKLSSVIDSL NSRNNNFENP NVNPSLEQKP QPFGPQVMAN QTQFQNAACV 240 NIFGSSSYDI NQEQPPPKRH NSGTLGGALL PKVPFFDANC DFMLRKQPLG QMQPQVNLLP 300 PHQFQPKPLI VPKLEAAGGG GNGNLMVPRH QLQEQQFIYD QIFQASELLL AGQFSNAQMI 360 LARLNQQLSP IGKPSRRAAF YIKEALQLPF LLPCTSTFLP PRSPTPFDCV LKMDAYKAFS 420 EISPLIQFMN FTSNQAILEA LGDAEQIHII DFDIGFGAQW SSFMQELPSS NRKATSLKIT 480 AFASPSTHHS VEIGIMHESL TQFANDAGIR FELEVINLDS FDPKSYPLST LRSSECEAIA 540 INFPIWSISS CPFAFPSLLH CMKQLSPKVV VSLERGCERI ELPLKHHLIH ALQYYETLLA 600 SIDAANITPD IGKKIERSLF QPSIENMILG RLRSSDRMPP WRNLFASAGF SPVAFSNMTE 660 IQAECVVKRT QVGGFHVQKR QTSLVLCWKQ QELLSAVTWR C

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MIVIPQSNNL PAKGVLGVSG FVPSISSSSS PEASICKKDA NFTRNEPVSV LDTRSPSPSA  60
SSSSCSYGAQ HGGNTAVPGV GSGKTDGRKE ELVTELEPFT VGLEPEKSVL GFGDLDNLLP  120
EFAGSDQSFL RWISGDLEDP SVSLKQLLNG DLGCGVSLQS SGFEVSATGS LAHSDNVSFS  180
GSNICLNANI EKLSSVIDSL NSRNNNFENP NVNPSLEQKP QPFGPQVMAN QTQFQNAACV  240
NIFGSSSYDI NQEQPPPKRH NSGTLGGALL PKVPFFDANC DFMLRKQPLG QMQPQVNLLP  300
PHQFQPKPLI VPKLEAAGGG GNGNLMVPRH QLQEQQFIYD QIFQASELLL AGQFSNAQMI  360
LARLNQQLSP IGKPSRRAAF YIKEALQLPF LLPCTSTFLP PRSPTPFDCV LKMDAYKAFS  420
EISPLIQFMN FTSNQAILEA LGDAEQIHII DFDIGFGAQW SSFMQELPSS NRKATSLKIT  480
AFASPSTHHS VEIGIMHESL TQFANDAGIR FELEVINLDS FDPKSYPLST LRSSECEAIA  540
INFPIWSISS CPFAFPSLLH CMKQLSPKVV VSLERGCERI ELPLKHHLIH ALQYYETLLA  600
SIDAANITPD IGKKIERSLF QPSIENMILG RLRSSDRMPP WRNLFASAGF SPVAFSNMTE  660
IQAECVVKRT QVGGFHVQKR QTSLVLCWKQ QELLSAVTWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-27	344	699	25	378	Protein SCARECROW
5b3h_A	3e-27	344	699	24	377	Protein SCARECROW
5b3h_D	3e-27	344	699	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085599.1	0.0	scarecrow-like protein 22
Refseq	XP_015085600.1	0.0	scarecrow-like protein 22
TrEMBL	A0A3Q7IP28	0.0	A0A3Q7IP28_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400012104	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-100	GRAS family protein