PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g026900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 193aa    MW: 21814.5 Da    PI: 5.0934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g026900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18858256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g+
  Sopen08g026900.1  8 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAIAIKGH 58
                      69****888.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-12758IPR001471AP2/ERF domain
CDDcd000182.15E-33767No hitNo description
SMARTSM003803.4E-36871IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-31866IPR001471AP2/ERF domain
PROSITE profilePS5103222.431865IPR001471AP2/ERF domain
PRINTSPR003672.2E-10920IPR001471AP2/ERF domain
PRINTSPR003672.2E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDDSKHPIYH GVRKRSWGKW VSEIREPRKK SRIWLGTFST AEMAARAHDV AAIAIKGHLA  60
LLNFPELAHQ FPIPSSKCAK DIQSAAAKAA ALNISPRNFM EKQSKGELME MLCSPEETES  120
SESSSSSSSS SNNEDPFLDL PDILMDLTQK FDKFCYYNSP WDLAGAVSFW PQEELYLWDY  180
NHDTETPLEV SQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-194761080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084630.21e-144ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ73e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1A1276e-94M1A127_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000123171e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]