PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g026680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 322aa    MW: 36132.5 Da    PI: 5.1846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g026680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20183233255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+  ++g
  Sopen08g026680.1 183 HYRGVRQRP-WGKYAAEIRDPRRRG--SRVWLGTFDTAIEAAKAYDKAAFTMRG 233
                       7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32182242IPR001471AP2/ERF domain
CDDcd000185.35E-30183241No hitNo description
SMARTSM003801.7E-36183247IPR001471AP2/ERF domain
PfamPF008475.8E-14183233IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22183243IPR016177DNA-binding domain
PROSITE profilePS5103223.644183241IPR001471AP2/ERF domain
PRINTSPR003671.7E-10184195IPR001471AP2/ERF domain
PRINTSPR003671.7E-10207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEYVDEFFAL EKIRTHLLGE FSPRTLKFGA ELTSSKCSDT VTGSCNSESA SSDSLPFDFF  60
FDIEADLFQF GAGVSNSSSE SANSAYNRTD FVKIESEPSI SSSDYEENQS KCFQFKSEPQ  120
VFIDLTSPKS TKLSIASDRK PSLKIDLPPV KKYEWIDFGN SAQSDPIVSV PVKQIREAEE  180
RRHYRGVRQR PWGKYAAEIR DPRRRGSRVW LGTFDTAIEA AKAYDKAAFT MRGSKAILNF  240
PLEVGKTLSY SSSAVEGGVK RRKEAVETEE ENMVKKCKEE ESCPLTPSSW NFVFEQNCNG  300
MFNLPPLSPL SPQLSCSQLI QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-30182244163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084517.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A3Q7HUM00.0A0A3Q7HUM0_SOLLC; Uncharacterized protein
STRINGSolyc08g078190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-38ethylene responsive element binding factor 5