PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g026660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 26950.8 Da PI: 4.7988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 138 | 188 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g Sopen08g026660.1 138 HYRGVRQRP-WGKFAAEIRDPAKNG--QRVWLGTYETAEDAAFAYDKAAFRMRG 188 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-32 | 137 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-23 | 138 | 198 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.118 | 138 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 138 | 188 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-30 | 138 | 196 | No hit | No description |
SMART | SM00380 | 2.7E-39 | 138 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-13 | 139 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-13 | 178 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MFENIDFEND YAFLESIKLQ LLEDWEWENP LTSSDNSIST YSRNNSIESN TFSNEFDYST 60 DKLSNDFDCS TDKFLSDLIN DNGVGYGSDP VIPNVKSEPE IWNFAEFAAA AAAVEVRVEP 120 PAQSVVTAPP QRLPTARHYR GVRQRPWGKF AAEIRDPAKN GQRVWLGTYE TAEDAAFAYD 180 KAAFRMRGSR AMLNFPLRVN SGEPEPIRVR SKKSSMSPEC SSSSSDNAPG KRRKKVPQAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-40 | 136 | 203 | 3 | 70 | ATERF1 |
3gcc_A | 8e-40 | 136 | 203 | 3 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084732.1 | 1e-178 | ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 4e-48 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A3Q7HUJ2 | 1e-151 | A0A3Q7HUJ2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g078170.1.1 | 1e-152 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-37 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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