PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g026470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 537aa    MW: 60202.4 Da    PI: 7.6251
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g026470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sopen08g026470.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                      ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11546No hitNo description
CDDcd002028.50E-17654No hitNo description
Gene3DG3DSA:3.30.50.102.5E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.8E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.1E-10283367IPR028020ASX homology domain
PfamPF165502.1E-9299375IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDY  60
RVSRFKNFTV KNKEVKMLKR KKSHDNPEIG ILPEYHQGFH RKALDEDTSN RSSSGSAVSN  120
TESYGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSVEKLTKD LYTILHEQQS  180
SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKHHSSNEA  240
YSQLTTPPVN ISKGVNSSNL VIQRTQKPTV QGVEHEQFKR SKDHLEKLQI LGHHNSPLCH  300
IDLKDVLNYE EFTRHLSSDE QQQLLKYLPP VDSFSPPESL RSMFESSQFE ENLSSFQKLL  360
AQGVFDNSLF GVTVEECRNL KRFMLCYLMK SKWVEQVNLL KDMKCKNSSS SSEVAGGRNV  420
FGTGHSVNMK RPRDGQHPKN LGVNTTMKSP KRVAMKNSYE QKEIMENDGS CFSPKSLFAL  480
PSENSFRFTN ESSDQDLLLD VPSNSSFPQA ELLLPTASFA AQASTSSSTI YPHLIRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883KRKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085914.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-147GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A3Q7HSL00.0A0A3Q7HSL0_SOLLC; Uncharacterized protein
STRINGSolyc08g077960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-151GATA transcription factor 26