PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g026040.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 374aa MW: 41565.5 Da PI: 5.9736

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g026040.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25	5.2e-08	51	86	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C CGn a+ C ++ C+ CC C+ hv Sopen08g026040.1 51 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHVL 86 568*******************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAASSPALSN HSADNAPSPA PAPAVPTATA AAAFSSLPTT NASKNLRGLN KPKCIKCGNV 60 ARSRCPFQSC KSCCAKAQNP CHIHVLKGGS TLPDKIPASG SPVVDQQSTE ASHAGSSHRA 120 VSLRQLSTNF AQFNNLQTPL RSRRPLSRKD AQVINEWRFM QLKEYRESNI AAENEAFDRY 180 MQNIGLLEEV FGVNSAEDEN NEDGSTEDEN EAMMNRVKLQ LRSDPVRIEN TRKRMQYVID 240 QGLRKVRKLE AGDNATDLND LDALGKKKKA KTAEAEHVAA FADLMDKLNK ARNEEDLKVC 300 WEMKSQLFNQ PKKEKQAEPE DAEASNEQSL KTSDPPIMPW GHSQPKWFST VTIDDEELRR 360 INEEFDSLED IEEL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAASSPALSN HSADNAPSPA PAPAVPTATA AAAFSSLPTT NASKNLRGLN KPKCIKCGNV  60
ARSRCPFQSC KSCCAKAQNP CHIHVLKGGS TLPDKIPASG SPVVDQQSTE ASHAGSSHRA  120
VSLRQLSTNF AQFNNLQTPL RSRRPLSRKD AQVINEWRFM QLKEYRESNI AAENEAFDRY  180
MQNIGLLEEV FGVNSAEDEN NEDGSTEDEN EAMMNRVKLQ LRSDPVRIEN TRKRMQYVID  240
QGLRKVRKLE AGDNATDLND LDALGKKKKA KTAEAEHVAA FADLMDKLNK ARNEEDLKVC  300
WEMKSQLFNQ PKKEKQAEPE DAEASNEQSL KTSDPPIMPW GHSQPKWFST VTIDDEELRR  360
INEEFDSLED IEEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083143.1	0.0	uncharacterized protein LOC107026617
TrEMBL	A0A3Q7INC1	0.0	A0A3Q7INC1_SOLLC; Uncharacterized protein
STRING	Solyc08g077450.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-84