PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 290aa    MW: 33220.5 Da    PI: 4.5656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEde+lv+++k+ G g+W +I+++ g++R++k+c++rw +yl
  Sopen08g025260.1 15 KGPWTSEEDEKLVEYIKENGHGNWQLIPKRAGLNRCGKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding56.66e-1868113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++++eE+e++++++ +lG++ W++Ia++++ gRt++++k+ w++yl
  Sopen08g025260.1  68 RGAFSEEEEEIIINLHSLLGNK-WSKIASHLP-GRTDNEIKNLWNTYL 113
                       89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4671062IPR017930Myb domain
SuperFamilySSF466892.62E-3212109IPR009057Homeodomain-like
SMARTSM007176.4E-171464IPR001005SANT/Myb domain
PfamPF002494.1E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251669IPR009057Homeodomain-like
CDDcd001671.67E-131762No hitNo description
PROSITE profilePS5129428.09563117IPR017930Myb domain
SMARTSM007174.4E-1667115IPR001005SANT/Myb domain
PfamPF002491.3E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRYPCCKVD EDLKKGPWTS EEDEKLVEYI KENGHGNWQL IPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGA FSEEEEEIII NLHSLLGNKW SKIASHLPGR TDNEIKNLWN TYLKKKLLKS  120
GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAELTEIA KMHIIQNIIQ VLNTPPPTSI  180
PSLQENNYPM QQCYNNNIIA PYDQIITNEP SPISNNLSDN NMIENSSAFE NNMINNVDYN  240
SEYSSLPSLV PVTPENSVPF DQQIIDMINP TYYDDFCELE KVLDDEANII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-33121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084385.10.0transcription factor MYB53
SwissprotQ9S9Z25e-71MYB93_ARATH; Transcription factor MYB93
TrEMBLK4CN310.0K4CN31_SOLLC; Uncharacterized protein
STRINGSolyc08g076700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-81myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]