PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g024950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 93466.5 Da PI: 4.8822 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 105 | 160 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Sopen08g024950.1 105 KKRYHRHSVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 160 6888999**********************************************998 PP | |||||||
2 | START | 153.7 | 1.6e-48 | 307 | 534 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWdetla 77 ela++ ++elvk+ ++++p+W + s ++ g+evl +e s+ ++ea r s+vv+m++ +lv +ld+++ + + Sopen08g024950.1 307 ELALSSMDELVKMCTSSDPLWIRAS-NDSGKEVLNVEEYSRMfpwpvgvkqnaneLKIEATRSSAVVIMNSITLVDAFLDTNKcieLFPSIIS 398 578999*******************.77777777777776667778889*********************************99999999999 PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +a+t++v++sg g lqlm++e+q+l+plv+ R+ +f+Ry++q ++g+w+ivd +ds ++ +++ +++pSg++i++++ng+s Sopen08g024950.1 399 RAKTIQVVTSGvsghasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PPPFPYFKRRPSGCIIQDMPNGYS 490 ***********************************************99***********99988877.57777777**************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +v+wveh++++++ + ++++++v sg+a+ga++w++ lqrqce+ Sopen08g024950.1 491 RVIWVEHAEVEENPVNQIFNHFVTSGVAFGAQRWLSILQRQCER 534 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-20 | 91 | 163 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.8E-18 | 94 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 102 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-19 | 103 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-17 | 105 | 163 | No hit | No description |
Pfam | PF00046 | 4.4E-17 | 105 | 160 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.021 | 298 | 537 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.48E-33 | 299 | 536 | No hit | No description |
CDD | cd08875 | 2.01E-110 | 302 | 533 | No hit | No description |
SMART | SM00234 | 7.0E-30 | 307 | 534 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-40 | 307 | 534 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-18 | 561 | 730 | No hit | No description |
SuperFamily | SSF55961 | 2.06E-18 | 767 | 807 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MFGDCQLFSS MGMGGNNNNN NNVSSDTLYS SSIQNPNFNF MTMGGNSLPF NIFPPNNIIP 60 KEENGLFKNK EEMDSGSGSE HIEGMSGNEL EPEQQQQQQQ QGGKKKRYHR HSVRQIQEME 120 ALFKECPHPD DKQRLKLSQD LGLKPRQVKF WFQNRRTQMK AQQDRSDNVI LRAENDNLKN 180 ENYRLQAALR SIMCPTCGGP AMLGEMGYDE QQLRLENARL KEEFERVCCL VSQYNGRGPM 240 QGLGPPNPLL PPSLELDMSI NNFTSKFEDQ PNCADMVPVP LLMPDQNNSQ FSGGPMILEE 300 EKSLAMELAL SSMDELVKMC TSSDPLWIRA SNDSGKEVLN VEEYSRMFPW PVGVKQNANE 360 LKIEATRSSA VVIMNSITLV DAFLDTNKCI ELFPSIISRA KTIQVVTSGV SGHASGSLQL 420 MFMEMQVLTP LVSTRECYFL RYCQQNVEEG SWAIVDFPLD SLHNNFPPPF PYFKRRPSGC 480 IIQDMPNGYS RVIWVEHAEV EENPVNQIFN HFVTSGVAFG AQRWLSILQR QCERLASLMA 540 RNISDLGVIP SPEARKSLMN LAQRMIKTFC MNISTCCGQS WTALSDSPDD TVRITTRKVT 600 EPGQPNGLIL SAVSTSWLPY NHFQVFDLLR DERRRAQLDV LSNGNSLHEV AHIANGSHPG 660 NCISLLRINV ASNSSQSVEL MLQESCTDDS GSLVVYTTVD VDAIQLAMNG EDPSCIPLLP 720 LGFVITPINN GQVNMNNSDN VVSGTEANSS QSSEKRQNSS SIQEYSGGCL LTVGLQVLAS 780 TIPSAKLNLS SVTAINHHLC NTVQQINAAL VAFYPDTEVT APSSPPPQQP ESSKQADENS 840 NS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085651.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Refseq | XP_015085652.1 | 0.0 | homeobox-leucine zipper protein HDG5 isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A3Q7HTK9 | 0.0 | A0A3Q7HTK9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9020 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |