PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g024950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 842aa    MW: 93466.5 Da    PI: 4.8822
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g024950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-19105160156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ ++++  q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Sopen08g024950.1 105 KKRYHRHSVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 160
                       6888999**********************************************998 PP

2START153.71.6e-483075341206
                       HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS
             START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWdetla 77 
                       ela++ ++elvk+ ++++p+W + s ++ g+evl  +e s+               ++ea r s+vv+m++ +lv  +ld+++    +   + 
  Sopen08g024950.1 307 ELALSSMDELVKMCTSSDPLWIRAS-NDSGKEVLNVEEYSRMfpwpvgvkqnaneLKIEATRSSAVVIMNSITLVDAFLDTNKcieLFPSIIS 398
                       578999*******************.77777777777776667778889*********************************99999999999 PP

                       EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
             START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                       +a+t++v++sg      g lqlm++e+q+l+plv+ R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i++++ng+s
  Sopen08g024950.1 399 RAKTIQVVTSGvsghasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PPPFPYFKRRPSGCIIQDMPNGYS 490
                       ***********************************************99***********99988877.57777777**************** PP

                       EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +v+wveh++++++ + ++++++v sg+a+ga++w++ lqrqce+
  Sopen08g024950.1 491 RVIWVEHAEVEENPVNQIFNHFVTSGVAFGAQRWLSILQRQCER 534
                       ******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-2091163IPR009057Homeodomain-like
SuperFamilySSF466892.8E-1894163IPR009057Homeodomain-like
PROSITE profilePS5007116.584102162IPR001356Homeobox domain
SMARTSM003899.5E-19103166IPR001356Homeobox domain
CDDcd000861.44E-17105163No hitNo description
PfamPF000464.4E-17105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084841.021298537IPR002913START domain
SuperFamilySSF559619.48E-33299536No hitNo description
CDDcd088752.01E-110302533No hitNo description
SMARTSM002347.0E-30307534IPR002913START domain
PfamPF018522.0E-40307534IPR002913START domain
SuperFamilySSF559612.06E-18561730No hitNo description
SuperFamilySSF559612.06E-18767807No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNNNNN NNVSSDTLYS SSIQNPNFNF MTMGGNSLPF NIFPPNNIIP  60
KEENGLFKNK EEMDSGSGSE HIEGMSGNEL EPEQQQQQQQ QGGKKKRYHR HSVRQIQEME  120
ALFKECPHPD DKQRLKLSQD LGLKPRQVKF WFQNRRTQMK AQQDRSDNVI LRAENDNLKN  180
ENYRLQAALR SIMCPTCGGP AMLGEMGYDE QQLRLENARL KEEFERVCCL VSQYNGRGPM  240
QGLGPPNPLL PPSLELDMSI NNFTSKFEDQ PNCADMVPVP LLMPDQNNSQ FSGGPMILEE  300
EKSLAMELAL SSMDELVKMC TSSDPLWIRA SNDSGKEVLN VEEYSRMFPW PVGVKQNANE  360
LKIEATRSSA VVIMNSITLV DAFLDTNKCI ELFPSIISRA KTIQVVTSGV SGHASGSLQL  420
MFMEMQVLTP LVSTRECYFL RYCQQNVEEG SWAIVDFPLD SLHNNFPPPF PYFKRRPSGC  480
IIQDMPNGYS RVIWVEHAEV EENPVNQIFN HFVTSGVAFG AQRWLSILQR QCERLASLMA  540
RNISDLGVIP SPEARKSLMN LAQRMIKTFC MNISTCCGQS WTALSDSPDD TVRITTRKVT  600
EPGQPNGLIL SAVSTSWLPY NHFQVFDLLR DERRRAQLDV LSNGNSLHEV AHIANGSHPG  660
NCISLLRINV ASNSSQSVEL MLQESCTDDS GSLVVYTTVD VDAIQLAMNG EDPSCIPLLP  720
LGFVITPINN GQVNMNNSDN VVSGTEANSS QSSEKRQNSS SIQEYSGGCL LTVGLQVLAS  780
TIPSAKLNLS SVTAINHHLC NTVQQINAAL VAFYPDTEVT APSSPPPQQP ESSKQADENS  840
NS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085651.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_015085652.10.0homeobox-leucine zipper protein HDG5 isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A3Q7HTK90.0A0A3Q7HTK9_SOLLC; Uncharacterized protein
STRINGSolyc08g076370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7