PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g024600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 361aa MW: 39826.1 Da PI: 8.1335 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.3e-25 | 89 | 133 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Sopen08g024600.1 89 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 133 79****************************************986 PP | |||||||
2 | QLQ | 65.5 | 1.3e-22 | 28 | 63 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Sopen08g024600.1 28 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 63 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-13 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.343 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.5E-17 | 28 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.3E-21 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSGTSTSVVG GGGGGEGGMG YGYGYRPPFT AVQWQELEHQ AMIYKYLVAG LPVPPDLVVP 60 IRRSFEAISA RFFHHPSLGY CSYYGKKFDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM 120 HRGRNRSRKP VESQSTPQSL STNMSQITTG SSNTRGNFQN SSSGSFQNMP LYSVANSGTL 180 NYGSTGTKLQ MEPVSYGIDN KDYRYLHGIT PDADEHNLSS EASATVRSLG MGTNTDSTWV 240 LPSQISSSPM ARSKNDSQLL GSSTEMHLPN LLEPMIDATI SKRRHQHCFF GSDIDSPGTV 300 KEEQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS ISIPIAPSNF SSRSACSPND 360 T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083826.1 | 0.0 | growth-regulating factor 4-like | ||||
Refseq | XP_015083827.1 | 0.0 | growth-regulating factor 4-like | ||||
TrEMBL | A0A3Q7HTE3 | 0.0 | A0A3Q7HTE3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g075950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-50 | growth-regulating factor 5 |