PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g023720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 522aa    MW: 60285.3 Da    PI: 9.0738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g023720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08191237455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       a +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Sopen08g023720.1 191 AQSMAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATYKYIKLLQ 237
                       567889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-11184245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-9185239No hitNo description
Gene3DG3DSA:4.10.280.101.3E-10186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.982187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF080794.8E-27288359IPR012988Ribosomal protein L30, N-terminal
TIGRFAMsTIGR013105.2E-99289522IPR005998Ribosomal protein L7, eukaryotic
SuperFamilySSF551292.75E-59363522IPR016082Ribosomal protein L30, ferredoxin-like fold domain
CDDcd016575.70E-92363522No hitNo description
Gene3DG3DSA:3.30.1390.208.1E-36364419IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PfamPF003272.6E-21364414IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PROSITE patternPS006340382414IPR018038Ribosomal protein L30, conserved site
Gene3DG3DSA:3.30.1390.208.1E-36483522IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005773Cellular Componentvacuole
GO:0009506Cellular Componentplasmodesma
GO:0009507Cellular Componentchloroplast
GO:0016020Cellular Componentmembrane
GO:0022625Cellular Componentcytosolic large ribosomal subunit
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MASVSYYSAS KLEPNVQEFN SEEMMTMQQL LFDFNYDVEQ NFSDENQDCY FDPDEFILPI  60
EMNNSCCFMP EYSVFEKQPK DNHSCFIPEY SVFESIPKRQ KIFQDDFFPN PNSNTITPST  120
HNSCFMPEYS VFEKQQKLFQ DNFHEGFVPN PPMFEDFALP EIPMPVFSSN NAAGVVAKEG  180
CSSNNEKKMS AQSMAARQRR KKISDKTQEL GKLIPGGHRM NTAEMLQATY KYIKLLQAQA  240
GLLAFMGSYQ TESPFHLPWA QKSSINPILF SLLQYQEMGE VVKGAVPVPE SVLKKQKRSE  300
EWALAKTQEL VAAKKKSAEN RKLIYNRAKQ YAKEYDQQEK ELIRLKREAR LKGGFYVDPE  360
AKLLFITRIR GINAMPPQTK KILQLLRLRQ IFNGVFLKVN KATVNMLHRV EPYVTYGYPN  420
LKSIRELIYK RGYGKVDKQR IALTDNAVIE QVLGKYGIIC MEDLVHEIMT VGPHFKQANN  480
FLWPFQLKAP LGGLKKKRNH YVEGGDAGNR ENFINELIRR MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Le1e-1332865228244Ribosomal protein L7
4v7e_CF1e-133286522824460S ribosomal protein L30
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085695.20.060S ribosomal protein L7-3-like
STRINGSolyc08g075090.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-16bHLH family protein