PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g022170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 1038aa    MW: 114678 Da    PI: 5
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g022170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-183682148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Sopen08g022170.1 36 KGQWTPEEDDTLCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                      799****************************9.************986 PP
2Myb_DNA-binding59.66.7e-1988134148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEde + ++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Sopen08g022170.1  88 KGPWSKEEDEVIGELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                       79******************************.*************97 PP
3Myb_DNA-binding47.34.6e-15140182145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +WT+eE+  lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Sopen08g022170.1 140 KEAWTQEEEMTLVHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 182
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.763182IPR017930Myb domain
SuperFamilySSF466894.67E-183496IPR009057Homeodomain-like
SMARTSM007171.8E-143584IPR001005SANT/Myb domain
PfamPF002498.5E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-223794IPR009057Homeodomain-like
CDDcd001676.86E-133982No hitNo description
PROSITE profilePS5129433.19983138IPR017930Myb domain
SuperFamilySSF466895.24E-3185181IPR009057Homeodomain-like
SMARTSM007175.8E-1787136IPR001005SANT/Myb domain
PfamPF002497.1E-1788134IPR001005SANT/Myb domain
CDDcd001672.83E-1590134No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2795141IPR009057Homeodomain-like
SMARTSM007174.5E-14139187IPR001005SANT/Myb domain
PROSITE profilePS5129418.388139189IPR017930Myb domain
PfamPF002495.4E-13140183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-21142189IPR009057Homeodomain-like
CDDcd001677.73E-11142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MESDRISTPS DGTSSSYQRV RPLHGRTSGP TRRSTKGQWT PEEDDTLCKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIG ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEEMT LVHAHQIYGN KWAELTKFLP GRTDNAIKNH  180
WNSSVKKKLD TFLTSAPLAQ FPALPIVNHQ NQSIRSSIKL QQSSEDDSVR KEGTEMEEVS  240
ECSQGSNLAG CSQSTSDMGN TFAHTREESK LLEDSNYRKD PSASSAPCSE YYTPAFEDIT  300
FSVEEVPSEL AESKLLEHNF SHDWATSMGK DWQFNPDDIP NVSPLELMQD SSGLFMQCLT  360
GTENHDMVSF PQQNGMKFET TNDGSMVVGL HQPNEMFTSV EGFRMVYPEA EIPQCFPSET  420
AMNGVDETAG SLIYQISEGG NMSIENCNPL CSDVMGTSSC QPCSVPSQFS SEQSSFMFGI  480
ASNQFHNPPH PAHESQTSKC DSFPYPIESD SPCDNIMDDP LLKDQLDQTK DSVQLVSVND  540
FGSTSSNTIQ TCPMVNGNSA VKEEKKDGGA LCYEPPRFPS LDVPFFSCDL IQSGTDTQQE  600
FSPLGIRQLM MTSVNCLTPF RLWDSPKRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP  660
LSEKRCGKKL ESDLRRESFS NLAKDFSRLD VMFDDSANEK AMSSLTTDQT VELQASYEDK  720
ENINPTEDGR KEEDKGCNGH SICGTSGRQL DGGEVHYKDQ GTREGKRIGA NDAIGKIKQP  780
SGVLVELNAS DLFFSPDRFG ANSDRATNLS NKALGNQYAR RIEAASNQGS VSSSFETSCF  840
SVICSPRIRG KKDGSTFVIT TSMQSAPTST ALENSAETSG NGVGAETVSI SGETPYKRSI  900
ESPSAWKSPW IFTPFLSSPR LDNELTFEDL ALFMSPGDRS YDAIGLMKQL SEQTAGAFAD  960
AQEVLGGDTP ESILRGRNSK NQKADENHSL LSANAMSERR TLDFSECGSP GKGKETEKCC  1020
SSNNSFSSPS SYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-68361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-68361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561230.0AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085926.10.0transcription factor MYB3R-1-like
RefseqXP_015085927.10.0transcription factor MYB3R-1-like
TrEMBLA0A3Q7HRX50.0A0A3Q7HRX5_SOLLC; Uncharacterized protein
STRINGSolyc08g068320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-123Homeodomain-like protein