PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g021300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 211aa MW: 24023 Da PI: 7.0043 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 82 | 141 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+ Sopen08g021300.1 82 VKDGYNWRKYGQKVTRDNPYPRAYYKCSFApTCPVKKKVQRSIEDPSILVGVYEGEHNHP 141 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 73 | 143 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.06 | 77 | 143 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-26 | 78 | 143 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-33 | 82 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 83 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLTNLCENYN SLQTHLIELL QKYSSNKEED NSNLLLSRKR KAEEECCVNN FEEASPKRPR 60 EITTNVSTVC VKTNRSDQTS VVKDGYNWRK YGQKVTRDNP YPRAYYKCSF APTCPVKKKV 120 QRSIEDPSIL VGVYEGEHNH PHPSQTEMTV PLVNQDVSTF SNKFMEDIET NSLQQHLVQQ 180 MATSLTSSPT FTAAVAAAIS GKIFEYDLPF N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-21 | 78 | 144 | 13 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-21 | 78 | 144 | 13 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-155 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084634.1 | 1e-158 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 3e-54 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A3Q7HRE6 | 1e-154 | A0A3Q7HRE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g067360.2.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-56 | WRKY DNA-binding protein 40 |