PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g021070.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CPP

Protein Properties

Length: 972aa MW: 104798 Da PI: 6.7927

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g021070.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.5	1.7e-15	551	589	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag++C ++C+C++C N+ e Sopen08g021070.1 551 CKRCNCKKTKCLKLYCDCFAAGVYCVDSCTCQGCLNRPE 589 79**********************************876 PP
2	TCR	50.5	4.2e-16	638	676	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN Sopen08g021070.1 638 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 676 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-14	549	590	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.191	550	678	IPR005172	CRC domain
Pfam	PF03638	2.0E-11	552	587	IPR005172	CRC domain
SMART	SM01114	3.5E-17	638	679	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-11	640	675	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MDSPEPSSVI NATINTTLSS DPGPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL 60 LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNNAI TDSDGTGVFI YPLRSGLSPS 120 VQKVSDNNIS VHEQSGTPIS CVDEFLVDVS NSESGNPSNS NNTSPKVADS IPQPPNSAED 180 SKVPVVSIAS KDERKDEIPE DAAHVVVEQA EEDNKGKSPS NQKYTVVYST SNPDLPSLGL 240 CTKIVPGFDA HSSLHNHYGD RQMAQLSRAG HTMLDEASNI PIKSLETARD CRDDNNKIST 300 MSIVPDDDIL QHDSQTKASQ HQSGISRRCL QFEDAQQKMA PASSSSQNAS GIVSCSIQPV 360 SPAVIEVVEP VLSNRSSTTS NRRLTQLVSS SVNSESLNVK VSKPSGIGLH LNSIVNGMEA 420 GSGVTVSVKS TQRGNLSIRG KKLTSMMSCH PSKNLKNCLI SSNVVGSNLT SGDNDGIHES 480 YRSDAESAAA SLSHNNAKPL NDTVLLKPTE HTPSNKRKLN SEHIDSNMDY NQSSPQKKRK 540 KTSDGNDGDG CKRCNCKKTK CLKLYCDCFA AGVYCVDSCT CQGCLNRPEY EDTVLDVRQQ 600 IQSRNPLAFA PKIVQHSTSS PANILGEGVA SFTPSSARHK RGCNCKKSMC LKKYCECYQA 660 NVGCSSGCRC EGCKNVFGPK EDYGIDLVNK HCITERLERS VEEEVEMVTA TSGLLQSGPI 720 NECNSTPLTP SFRRSNNVDA SKSWFTSGRY LSSPESGQAN TAPYGLSPGS PRSSNNHDIH 780 QESTGDMLDL VTFDHELSYG NAKLANEISP GFNVTGNMDD ILALPKSQDW ACNSGGQLIP 840 QTVHFQSTDP LSWRNSPMTH MTQFDGSGMN ALELLDSDKK PYVLEDDTPE ILKDSSIPQI 900 GVKVNSPNKK RVSPPYRHLN EIGSSSPGGG LKSGRKFILR AVPSFPPLSP CIQSKNVAAH 960 STNNSEKDSS SK

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MDSPEPSSVI NATINTTLSS DPGPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL  60
LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNNAI TDSDGTGVFI YPLRSGLSPS  120
VQKVSDNNIS VHEQSGTPIS CVDEFLVDVS NSESGNPSNS NNTSPKVADS IPQPPNSAED  180
SKVPVVSIAS KDERKDEIPE DAAHVVVEQA EEDNKGKSPS NQKYTVVYST SNPDLPSLGL  240
CTKIVPGFDA HSSLHNHYGD RQMAQLSRAG HTMLDEASNI PIKSLETARD CRDDNNKIST  300
MSIVPDDDIL QHDSQTKASQ HQSGISRRCL QFEDAQQKMA PASSSSQNAS GIVSCSIQPV  360
SPAVIEVVEP VLSNRSSTTS NRRLTQLVSS SVNSESLNVK VSKPSGIGLH LNSIVNGMEA  420
GSGVTVSVKS TQRGNLSIRG KKLTSMMSCH PSKNLKNCLI SSNVVGSNLT SGDNDGIHES  480
YRSDAESAAA SLSHNNAKPL NDTVLLKPTE HTPSNKRKLN SEHIDSNMDY NQSSPQKKRK  540
KTSDGNDGDG CKRCNCKKTK CLKLYCDCFA AGVYCVDSCT CQGCLNRPEY EDTVLDVRQQ  600
IQSRNPLAFA PKIVQHSTSS PANILGEGVA SFTPSSARHK RGCNCKKSMC LKKYCECYQA  660
NVGCSSGCRC EGCKNVFGPK EDYGIDLVNK HCITERLERS VEEEVEMVTA TSGLLQSGPI  720
NECNSTPLTP SFRRSNNVDA SKSWFTSGRY LSSPESGQAN TAPYGLSPGS PRSSNNHDIH  780
QESTGDMLDL VTFDHELSYG NAKLANEISP GFNVTGNMDD ILALPKSQDW ACNSGGQLIP  840
QTVHFQSTDP LSWRNSPMTH MTQFDGSGMN ALELLDSDKK PYVLEDDTPE ILKDSSIPQI  900
GVKVNSPNKK RVSPPYRHLN EIGSSSPGGG LKSGRKFILR AVPSFPPLSP CIQSKNVAAH  960
STNNSEKDSS SK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-22	552	675	12	120	Protein lin-54 homolog
5fd3_B	1e-22	552	675	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	536	540	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085212.1	0.0	protein tesmin/TSO1-like CXC 2
Refseq	XP_015085213.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A3Q7HP37	0.0	A0A3Q7HP37_SOLLC; Uncharacterized protein
STRING	Solyc08g067150.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-62	TESMIN/TSO1-like CXC 2