PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g020320.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92340.8 Da    PI: 5.7968
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g020320.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-191876357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sopen08g020320.1 18 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                      5678*****************************************************97 PP
2START177.11.1e-551633712205
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  g+++
  Sopen08g020320.1 163 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGngGTIE 254
                       7899******************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++l+p Rdf+  Ry+  +++g++vi+++S++++q+ p+    +s+vRa  lpSg+li+p+++g+s +++v+h+dl+ ++++++l
  Sopen08g020320.1 255 LLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVL 347
                       *********************************************9998899***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXXX CS
             START 182 rslvksglaegaktwvatlqrqce 205
                       r+l++s++   ++t++a+l+++++
  Sopen08g020320.1 348 RPLYESSTLLSQRTTMAALRHLRQ 371
                       *******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6941377IPR001356Homeobox domain
SMARTSM003896.8E-161581IPR001356Homeobox domain
SuperFamilySSF466891.07E-161779IPR009057Homeodomain-like
CDDcd000861.26E-161878No hitNo description
PfamPF000461.6E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182076IPR009057Homeodomain-like
CDDcd146868.37E-670109No hitNo description
PROSITE profilePS5084825.755153381IPR002913START domain
CDDcd088753.34E-80157372No hitNo description
SMARTSM002349.8E-40162372IPR002913START domain
SuperFamilySSF559616.59E-37163373No hitNo description
PfamPF018525.7E-53163371IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-22163368IPR023393START-like domain
PfamPF086703.8E-50697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MMAVTSSCKD KFGMDSGKYV RYTPEQVEAL ERLYHECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKES SRLQGVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENSFFRQ  120
QTQTAALATT DNNSCESVVT SGQHNLTPQR PPRDASPAGL LSLAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCSGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD  240
VLNVMSTGNG GTIELLYMQL YAPTTLAPAR DFWLMRYTSV MEDGSLVICE RSLNNTQNGP  300
SMPPVQSFVR ADILPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLSQR  360
TTMAALRHLR QISQEISHPT VSGWGRRPAA LRALGQRLSK GFNEAVNGFT DEGWSMLESD  420
GIDDVTILVN SSPSKLMGAN ISYANGFPSM SSAVLCAKAS MLLQNVPPPI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC SIPVTRIGSF GGQIILPLAH TIEHEEFMEV IRLESIGHYQ  540
DDMIMPSDIF LLQLCNGVDE NAIGTCAELM FAPIDASFAD DAPLLPSGFR IIPLDSKADA  600
SSPNRTLDLA STLEVGPAGS RPTGDHSKNS GSAKSVMTIA FQFAFEIHLQ ESIAAMACQY  660
VRSIISSVQR VALALSPSRI GSLPGLRSPP GTPEAQTLAR WICQSYRFFL GVELLKSASG  720
GSESILKEIW DHSDALMCCS MKALPVFTFA NEAGLDMLET TLVALQDISL EKIFDDNGRK  780
ALYSELPQIM QQGFACLQGG ICLSSMGRPI SYERAVAWKV LNEEEDAHCI CFMFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085523.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7HQY20.0A0A3Q7HQY2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000749340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]