PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g019610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 23507.4 Da PI: 6.7551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G++ +W + +++ g++R++k+c++rw++yl Sopen08g019610.1 14 RGQWSPEEDEILKNYIFNHGNPgSWISLPKRAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++Ed + + +qlG++ W+ Ia++++ gRt++++k++w++ Sopen08g019610.1 69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNS 111 79*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.248 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.92E-7 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.892 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-9 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVRAPCCDKS KVKRGQWSPE EDEILKNYIF NHGNPGSWIS LPKRAGLNRC GKSCRLRWLN 60 YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN SKLKKKVSAT 120 KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF 180 ESFFPMDSNT SDGIWSTQLD GIDDLLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084319.1 | 1e-153 | transcription factor MYB36-like | ||||
Swissprot | Q9M2Y9 | 9e-57 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | K4CLH0 | 1e-147 | K4CLH0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g065910.1.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-59 | myb domain protein 84 |
Publications ? help Back to Top | |||
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