PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g015980.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 824aa MW: 94476.3 Da PI: 7.3908 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89 | 6.8e-28 | 67 | 153 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g++ e+++ ++r+ ++++t+Cka+++vk+++dgkw+v+++ ++HnHel p Sopen08g015980.2 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGTTPESDTG---SSRRPSVKKTDCKASMHVKRKRDGKWYVHEFIKDHNHELLP 153 9***************************************999877...77888899******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-25 | 67 | 153 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.5E-25 | 273 | 365 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.039 | 553 | 589 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.5E-7 | 563 | 588 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-8 | 564 | 591 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MVDHGDVVQS SVQLTGDMVD AVDKSCLSRD GGVSRSPKRS ITGVEEHADF EPHDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGTTPESD TGSSRRPSVK 120 KTDCKASMHV KRKRDGKWYV HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILNAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ FDKGRCLSLE EGDAHVMLEY FMHVQKENPC 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY MKSNEKMPFA LLIGVNHHCQ 300 PMLLGCALIA DETKPTFVWL MKTWLRAVGG KAPKVIIADQ DKSLKSALEE VFPCSSHCFA 360 LWHVLERIPE TLAHVVKQHE NFMQKFSKCI FKSLTDEQFD LRWWKMVSRF ELQENEWIHT 420 LYEDRKKWIP AYMRGSFMAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE 480 EEAIADFDTL HKLPALKSPS PWEKQMSTIY THTIFKKFQV EVLGVVGCHP KKEVVNGENV 540 TFRVDDCEKD ENFMVTWNEA RSDVSCSCLL FEYNGFLCRH AMIVLQMCGL SIIPSQYILK 600 RWTKDAKNIQ LISEGTERIQ NRVRRYNDLC RRAIELGEEG SLSEESYGIA FRALDEALKN 660 CVNVNNRSSA LTECSSSAVG LRDLEEDTQG IHAIKTSRKK NTNKKRKVHS EPEAAIVEAK 720 DSLQQMDSLT VGGMTLNGYY GTHQNVQGLL NLMEPPHDGY YVNQQNMQGL GQLNTIAPGH 780 DGFFGSQQSI PGLGHLDFRQ PSFTYGLQDE PSLRAAQLHG NNAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085223.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | K4CKM9 | 0.0 | K4CKM9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g060840.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |