PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g015840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 330aa MW: 36558 Da PI: 7.2145 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.8 | 1.1e-39 | 42 | 184 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk +eWLl++a p+i el+ +++ + + ++e++ss+++++s++ Sopen08g015840.1 42 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKVVEWLLKAAAPSIAELPPLEALQDTLQlSDEKRSSEQGFDSADiemdd 134 689*************************************************************55555222455555555555555577888 PP TCP 89 ...kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134 +++++++ ++s++s+ s l+l++ +sr kar+rarer +ek ++ + Sopen08g015840.1 135 dlnYNNQQQPSCSNSETSKGSGLSLSRsDSRVKARERARERATEKVANHH 184 88766677778888888888899*9999****************998864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-39 | 43 | 181 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.958 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.952 | 162 | 179 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSNKEDEQYD VGEVKKSGDL GGGIGKLYGW PTSRIVRVSR ASGGKDRHSK VLTSKGLRDR 60 RVRLSVNTAI QFYDLQDRLG CDQPSKVVEW LLKAAAPSIA ELPPLEALQD TLQLSDEKRS 120 SEQGFDSADI EMDDDLNYNN QQQPSCSNSE TSKGSGLSLS RSDSRVKARE RARERATEKV 180 ANHHRNMHPN SSFTELLTGG MSDNKNNKTS VNDDQNTPRQ WSTNPLEYFT DGQIYLGNPL 240 RPVSSPIFSI TGEMQHFPFG GDLVPVVTSS NNEYNLNFSI SSSSSSGFNR GTLQSNSSST 300 LPHYQRYGSY LGSTTGYDNQ HSDQKGKEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00063 | PBM | Transfer from AT4G18390 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083360.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_015083361.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_027775178.1 | 0.0 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 1e-58 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | M1BRH9 | 0.0 | M1BRH9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051253 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-44 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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