PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g010620.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 415aa    MW: 46273.8 Da    PI: 6.606
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g010620.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.9e-39822252135
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ +++ + +   ++e++ss+++++s++     
  Sopen08g010620.2  82 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLEAFPDTLQlSDEKKSSEQGFDSADvemdd 174
                       689*************************************************************55555222355555555555555577788 PP

               TCP  89 ...kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                           +++++++ ++s++s+ s l+l++ +sr kar+ra+er +ek + k++
  Sopen08g010620.2 175 dlnYNQQQQPCCSNSETSKGSGLSLSRsDSRLKARERAKERATEKEKEKEN 225
                       8877788888999999999999*****9************99999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3983222IPR005333Transcription factor, TCP
PROSITE profilePS5136931.16784142IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.142202221IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MINAKDIYSP PSPRRYESCS MEMEEIRTDE CKFPRMSNKE DEQYQQYDVD DVGEVKKSSG  60
LGGIVKFYGR PSSRIVRVSR ASGGKDRHSK VLTSKGLRDR RVRLSVNTAI QFYDLQDRLG  120
CDQPSKAVEW LLKAAAPSIA ELPPLEAFPD TLQLSDEKKS SEQGFDSADV EMDDDLNYNQ  180
QQQPCCSNSE TSKGSGLSLS RSDSRLKARE RAKERATEKE KEKENKSCIV GQHHQNMHPR  240
SSFTELLTGG MSDNNTSPNG GSIHQNTARQ WSTNPLEYFT SGLLGPSATR GIDNQIYLGN  300
PLQPLRPMFS ITGEHRAELQ NFPFGGDNLV PGVTSSNTST NYNEYNLNFS ISSSSSSGFN  360
RGTLQSNSSS TLPHYQRFSP TDGSYLDSTT EYDARLHLFY GNGYEHSDQK GKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2089143155Putative transcription factor PCF6
5zkt_B1e-2089143155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085226.10.0transcription factor TCP2 isoform X1
RefseqXP_027774820.10.0transcription factor TCP2 isoform X1
TrEMBLG3BGW30.0G3BGW3_SOLLC; TCP transcription factor 24
STRINGSolyc08g048390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2