PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g009980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 592aa    MW: 66969.9 Da    PI: 9.2716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g009980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-12594198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                      ffk+ ++++++k++   +p +f+ ++g +      + le ++g  W+v+l  +++ g+ +l +GW++F +   +  g f++F+++g+s f   v 
  Sopen08g009980.1  5 FFKIILSPHASKLN---IPDEFVIKYGAD--LRDVVFLEVPTGAIWKVEL-LQNSNGTKYLNNGWNQFKEYYSIAIGYFLLFQYNGNSHF--SVC 91
                      78888888888776...*********877..445788999**********.566666689**************************9999..888 PP

                      EE- CS
                B3 96 vfr 98
                      +f+
  Sopen08g009980.1 92 IFD 94
                      887 PP
2B3581.7e-18490587199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       f   ++p++v+++ +l +p +f+++  ++  e++ + l+ ++grsW+ kl ++ +s+   + ++GW++Fv +n+Lke D++vF+l++  +   
  Sopen08g009980.1 490 FTVSMLPAYVSRNFQLEIPVDFFKKRVIE--EETIVNLRVSNGRSWRAKL-FDIQSNCpKMESSGWRDFVIDNNLKEHDTCVFELIDGiEPML 579
                       677899*****************888655..4568***************.544444448999***********************9889998 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                       l v++fr+
  Sopen08g009980.1 580 LDVTIFRA 587
                       99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-19296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.688296IPR003340B3 DNA binding domain
CDDcd100179.78E-15394No hitNo description
SuperFamilySSF1019363.34E-19396IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-12596IPR003340B3 DNA binding domain
PfamPF023625.9E-10594IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-20487587IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-20487588IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-20488586No hitNo description
SMARTSM010192.2E-15490588IPR003340B3 DNA binding domain
PfamPF023622.6E-16490587IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846490588IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MPPQFFKIIL SPHASKLNIP DEFVIKYGAD LRDVVFLEVP TGAIWKVELL QNSNGTKYLN  60
NGWNQFKEYY SIAIGYFLLF QYNGNSHFSV CIFDLSASEI EYLSGPNEHE PPVSRPNCLA  120
ERDRVKLEKP DVGEDLTYAT QKHKKSKRNG HSNEVVDPST SKVTTMNQHR TASSLDCRYP  180
LRSKQRKDVK IEKGDVEEGH CNEALVVLDP STSKVHSKKR TAASLDASNC RYPLRSKQLK  240
EVKIVKGDVE EHGNKVQVAD PSATKMTTTV RHHEKKTSAS FDTSHCRYPL RNKQLKEVKP  300
GKTNAEKDLL YVAQKAKRKK ANNVKLEKGD AEERSKVGDP SASTTTNQHN EKKTATSLDA  360
SHCRFPLRSK QHRDVKLEQW EEGGNMHNKT PVADSPYCRS QNPGLPASSP SCQPVRVKLE  420
KPDNLFCAAE KVKGRETNNV KLDTGDLEGN LIAASYKGKY STASEMTVLG KKKMLPSETQ  480
NRDMYFNPHF TVSMLPAYVS RNFQLEIPVD FFKKRVIEEE TIVNLRVSNG RSWRAKLFDI  540
QSNCPKMESS GWRDFVIDNN LKEHDTCVFE LIDGIEPMLL DVTIFRATTP VS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083829.10.0uncharacterized protein LOC107027163
TrEMBLA0A3Q7HK770.0A0A3Q7HK77_SOLLC; Uncharacterized protein
STRINGSolyc08g029090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein