PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 292aa    MW: 33554.5 Da    PI: 8.5642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.6e-3253158199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                       f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  Sopen08g004540.1  53 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGaGE 145
                       89****************************955666889*************************************************77699 PP

                       .SEE..EEEEE-S CS
                B3  88 .sefelvvkvfrk 99 
                        s+ +l++ ++r+
  Sopen08g004540.1 146 lSKHRLFIDWRRR 158
                       9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4048161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-3250159IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-2551141No hitNo description
PfamPF023621.7E-2953158IPR003340B3 DNA binding domain
PROSITE profilePS5086314.33953159IPR003340B3 DNA binding domain
SMARTSM010191.9E-2153159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNLFNSTMIQ DEASDSASCY YNQQLKRPSS STELMLMDSS STCDALVERE HMFDKVVTPS  60
DVGKLNRLVI PKQHAEKYFP LDSSSNDKGG LLLNFEDSNG KPWRFRYSYW NSSQSYVMTK  120
GWSRFVKEKK LDAGDVVSFQ RGAGELSKHR LFIDWRRRPH HENGNNQFML PHQFSDGRIF  180
PLQSYPTTFS RNYYNNPPHS YYMYGIGNSS ASTPYYSFNN NTSVMVNASH FDHNLMKSTS  240
VEEPRVFNSV PVVQGKVAAK RFRLFGVNMD YPMPSEESSE KGKSSMSFDL DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63461591114B3 domain-containing transcription factor NGA1
5os9_B2e-63461591114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083988.10.0B3 domain-containing transcription factor NGA3-like
SwissprotO827999e-70NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A3Q7HIG50.0A0A3Q7HIG5_SOLLC; Uncharacterized protein
STRINGSolyc08g013700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-72B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]