PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 902aa    MW: 103071 Da    PI: 8.032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.7e-31637742199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                       f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  Sopen08g004530.1 637 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGaGE 729
                       89****************************955666889*************************************************77699 PP

                       .SEE..EEEEE-S CS
                B3  88 .sefelvvkvfrk 99 
                        s+ +l++ ++r+
  Sopen08g004530.1 730 lSKHRLFIDWRRR 742
                       9999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142234.9E-1552140No hitNo description
Gene3DG3DSA:2.40.330.107.1E-40632745IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-31634743IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-23635725No hitNo description
PROSITE profilePS5086314.339637743IPR003340B3 DNA binding domain
PfamPF023621.2E-28637742IPR003340B3 DNA binding domain
SMARTSM010191.9E-21637743IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MRDYLMAEDS EVWDVICKGP YVPTMEVKDG EVTRVIPKTR KQFNDSDRLL VQKNHKARKL  60
LMCGLSINEY DLISSCESAK EIWDLLETTY EGTEEIRKSK LDLFSTQFED FTMNDGELIH  120
KVRTRFSNIT DELMFLEEPV PIVKIAEGKD KEGDQVCPKI SRREVFFREV KREMAAWERS  180
SSDSDDSENT DNGFMAKSDE EDSDEKVTLS YFKQNLNTFS TSKLRKLAVV LLGLISEMKD  240
EKDLVNNNLD IFQDGKMALV AQISDIESQM VVLETENLEL KEKIKGATTT IFKGKNEASR  300
LQLDLENKLH TAEMNIKVAF ERNHALERDL VRVKEELENS LKWTNSSKIL TNILGQGNNI  360
KGDLSCKRDC PAFKDCGESS SNYSKPRNKL KKGPGPVYGQ QKNLQKRGPG LHAKFVRSDS  420
NVEKKHKGPG PCYRFSKNTL PPWTGRFLVK PFDSYWELCL KWVPKSNNLT ELSAQGMNAE  480
GPGSWQSALV QIQMGYSHKS CHVRWDLVPD RVSSIRYIIG YSCKAVTSEH DKHHIIFIHP  540
KKEVSQQAFS RTHIEVCKGP GSRKQGTWYP QDCDVKRMKR QLSEKLSSLM RVVREEEASS  600
SSYNNQQLKR PSSSTTELML MDSSSTCDAL VEREHMFDKV VTPSDVGKLN RLVIPKQHAE  660
KYFPLDSSSN DKGGLLLNFE DSNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDV  720
VSFQRGAGEL SKHRLFIDWR RRPHHENGNN QFMLPHQFSD GRLFYYPTNL LLEGGSNMGH  780
PPNYYNPQSY MYEIGNRSYN ISNGTVINAN PLKNEIRWGG CSSTTTTGNY VEPRVFDSVP  840
VVQGKVAAKR FRLFGVNMDC PMDQDHPSIP ATTTVYSHLN NNNSTPSEEE SSEKGKSFDL  900
DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-586307431114B3 domain-containing transcription factor NGA1
5os9_B2e-586307431114B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.13e-65B3 family protein