PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 230aa    MW: 26050.8 Da    PI: 8.4463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-125195554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Sopen08g004440.1 51 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLGDAVTYINEL 95
                      899**********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.77E-1244100No hitNo description
PROSITE profilePS5088816.4634695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1750117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1651108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-105195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTIGNLLSES GISDFENDDS STINNIMNRS IKRAKKGDSS NIRREMAMDV HVEAERKRRE  60
KLNHRFYALR SVVPYVSKMD KASLLGDAVT YINELKDKIK NLESKLIEPQ KKHILMEQHD  120
SHSASSTIVT DHGANNKSLF SSNGARNGME IEVKIIGSEG VIRVQSLDMN YPCTRLMNAM  180
KEMKFQIYHA SISSVKDLML QDIVIRVPEE FSNEETLKSA IISKLSVMEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-2351104962Transcription factor MYC2
5gnj_B5e-2351104962Transcription factor MYC2
5gnj_E5e-2351104962Transcription factor MYC2
5gnj_F5e-2351104962Transcription factor MYC2
5gnj_G5e-2351104962Transcription factor MYC2
5gnj_I5e-2351104962Transcription factor MYC2
5gnj_M5e-2351104962Transcription factor MYC2
5gnj_N5e-2351104962Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459ERKRRE
25560RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084073.21e-165transcription factor bHLH14-like
TrEMBLA0A3Q7HIE61e-158A0A3Q7HIE6_SOLLC; Uncharacterized protein
STRINGSolyc08g008600.2.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-44bHLH family protein