PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 683aa    MW: 76237.6 Da    PI: 5.7213
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23131231198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+kvlt sd++++g +++ +k+a+e+       +   +  ++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF ++ 
  Sopen08g004260.1 131 FCKVLTASDTSTHGGFSILRKHANEClppldmtQ--ATPAQELVAKDLHGFEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVTGDSFVFLRS- 220
                       99****************************9544..444559************************************************54. PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                         ++e +++++r
  Sopen08g004260.1 221 -GKGEVRIGIRR 231
                       .68888999987 PP
2Auxin_resp103.72.3e-34257336183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+++F v+Y+Pr+  s+F++ ++k+++a+k+++svGmRfkm+fe+e+ +e+r++Gt+vgv+d ++++W++SkWrsLk
  Sopen08g004260.1 257 ASHAVTTQTMFVVYYKPRT--SQFIIGLNKYLEAVKHQYSVGMRFKMNFEGEEIPEKRFTGTIVGVED-SSSQWKDSKWRSLK 336
                       789***************6..9**********************************************.555*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-40119260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-41123246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-19129231No hitNo description
SMARTSM010193.5E-21131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055131233IPR003340B3 DNA binding domain
PfamPF023621.2E-21131231IPR003340B3 DNA binding domain
PfamPF065071.2E-32257336IPR010525Auxin response factor
PfamPF023093.4E-6560614IPR033389AUX/IAA domain
SuperFamilySSF542774.58E-12572654No hitNo description
PROSITE profilePS5174524.401578659IPR000270PB1 domain
PfamPF023096.7E-6623662IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MENQGSFMSN QQHQQHNFSA EGEDELCQEL WRLCAGPLVD VPKNEERVYY FPQGHMEQLE  60
ASTNQELNQS IPLFNLQPKI LCRVLHIQLL AEQDTDEVYA QIALLPEADQ VEPTSPDPSL  120
PEPPRPKVHF FCKVLTASDT STHGGFSILR KHANECLPPL DMTQATPAQE LVAKDLHGFE  180
WHFKHIFRGQ PRRHLLTTGW STFVSSKRLV TGDSFVFLRS GKGEVRIGIR RLARQPSSMP  240
QSVISSQSMH LGVLATASHA VTTQTMFVVY YKPRTSQFII GLNKYLEAVK HQYSVGMRFK  300
MNFEGEEIPE KRFTGTIVGV EDSSSQWKDS KWRSLKVQWD EPASVPRPDR VSPWDIEPFV  360
ASVATPLVPP MGVKNKRHRA HNEPKVSEPV PAAALAAWIP SAQFNPVIEG QSSDNPFSLH  420
TSQTNSTATN STFKARVDGI WSASKVNASL NMLLDETEAS KSASPRPAFP SFASSQFGKQ  480
NDLLLPSLDD ERKCDTITSC RLFGIDLKCP SFGSVNENPP LEPANNSDGS AEGCSGNLTS  540
AGDSEDNSGL SRDSEDQKQE QLNPPPKEVH IKQVSSTRTR TKVQMQGVAV GRAVDLTKLY  600
GYDELRRELE EMFDIQEELH ARNKWEIVFT DDEGDMMLMG DYPWSEFCNI AKRIFICSSQ  660
DIKSFSAGTK SPSCLESETT AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1722435917355Auxin response factor 1
4ldw_A1e-1722435917355Auxin response factor 1
4ldw_B1e-1722435917355Auxin response factor 1
4ldx_A1e-1722435917355Auxin response factor 1
4ldx_B1e-1722435917355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651270.0HM565127.1 Solanum lycopersicum auxin response factor 12 (ARF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775208.10.0auxin response factor 9-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A3Q7HIF40.0A0A3Q7HIF4_SOLLC; Auxin response factor
STRINGSolyc08g008380.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.11e-171auxin response factor 18