PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g004160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 345aa    MW: 39064.9 Da    PI: 7.716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g004160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-18137187256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p +   r r++lg+++ ae Aa a+++a+ kl+ge
  Sopen08g004160.1 137 LYRGVRQRH-WGKWVAEIRLPQK---RMRVWLGTYDNAEAAAYAYDRAACKLRGE 187
                       59******9.**********954...59*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500558.8791157IPR000242PTP type protein phosphatase
CDDcd000181.07E-17136196No hitNo description
PROSITE profilePS5103222.51137194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30137195IPR001471AP2/ERF domain
SMARTSM003805.3E-37137200IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21137195IPR016177DNA-binding domain
PRINTSPR003675.4E-12138149IPR001471AP2/ERF domain
PfamPF008473.7E-12138187IPR001471AP2/ERF domain
PRINTSPR003675.4E-12176196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006470Biological Processprotein dephosphorylation
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSRIQENMPY TYDEAAQIRS SLSQILLTSS TNTLDSIFSH YQEPKDQMTT TSPVLEPLCS  60
SVYLRQKDLL QKFWEQNRTN ITIPTTSTQT QLQESLYSQK FWEQNRANVT IPTTSTQTPL  120
QESLYSQRYV SPNKKKLYRG VRQRHWGKWV AEIRLPQKRM RVWLGTYDNA EAAAYAYDRA  180
ACKLRGEYAR LNFPNLRDPS ELGFGDSAKM NALKNSVDAK IQAICQKVKR GRAKKGGKKI  240
VESEKKVAKD VNLDSSSCSS SSLVGSESWS HSDMISQSSS DDGFLNSETC SVLGDCPMGP  300
ENDNCYITSI TPQFERPVLE SEFEDYSLAT MPSFDPELIW AVLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19134194263ATERF1
3gcc_A4e-19134194263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083452.10.0ethylene-responsive transcription factor ERF061
TrEMBLA0A3Q7HL660.0A0A3Q7HL66_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000149530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-44ERF family protein