PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g004160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 345aa MW: 39064.9 Da PI: 7.716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 137 | 187 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++ ae Aa a+++a+ kl+ge Sopen08g004160.1 137 LYRGVRQRH-WGKWVAEIRLPQK---RMRVWLGTYDNAEAAAYAYDRAACKLRGE 187 59******9.**********954...59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50055 | 8.879 | 1 | 157 | IPR000242 | PTP type protein phosphatase |
CDD | cd00018 | 1.07E-17 | 136 | 196 | No hit | No description |
PROSITE profile | PS51032 | 22.51 | 137 | 194 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 137 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-37 | 137 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 137 | 195 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-12 | 138 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-12 | 138 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-12 | 176 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006470 | Biological Process | protein dephosphorylation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSRIQENMPY TYDEAAQIRS SLSQILLTSS TNTLDSIFSH YQEPKDQMTT TSPVLEPLCS 60 SVYLRQKDLL QKFWEQNRTN ITIPTTSTQT QLQESLYSQK FWEQNRANVT IPTTSTQTPL 120 QESLYSQRYV SPNKKKLYRG VRQRHWGKWV AEIRLPQKRM RVWLGTYDNA EAAAYAYDRA 180 ACKLRGEYAR LNFPNLRDPS ELGFGDSAKM NALKNSVDAK IQAICQKVKR GRAKKGGKKI 240 VESEKKVAKD VNLDSSSCSS SSLVGSESWS HSDMISQSSS DDGFLNSETC SVLGDCPMGP 300 ENDNCYITSI TPQFERPVLE SEFEDYSLAT MPSFDPELIW AVLAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 134 | 194 | 2 | 63 | ATERF1 |
3gcc_A | 4e-19 | 134 | 194 | 2 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015083452.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A3Q7HL66 | 0.0 | A0A3Q7HL66_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014953 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3601 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 2e-44 | ERF family protein |