PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g003200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21903.8 Da PI: 8.4143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 88 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g Sopen08g003200.1 88 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRIRG 138 69*******.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.25 | 88 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-13 | 88 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-38 | 88 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-31 | 88 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 88 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 88 | 148 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.1E-11 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MIYENSELMN DFELLESIRQ HLLEDWDSPV TTVLKPSVKI EPEVSVSSPE MFDFTGFTAP 60 AATDVVKLEV ELKTAAVKRT PASSKSMHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYE 120 TAEDAALAYD KAAYRIRGSR ALLNFPLRVN SGEPEPVRVG SKRSLITTSS ESFSSSSSEN 180 ESMMTKKTKK VCQLYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-42 | 84 | 153 | 1 | 70 | ATERF1 |
3gcc_A | 2e-42 | 84 | 153 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084762.1 | 1e-144 | ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 1e-50 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | M0ZQG8 | 1e-117 | M0ZQG8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005836 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-42 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
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