PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 494aa    MW: 55631.1 Da    PI: 8.5062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-11441012787
                       ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       g+  +++ +++l+de  rsW+v +   k ++++ + +GW +F  ++gL++gD   F+l+++
  Sopen08g002450.1  44 GLM-NRKCEMVLKDEAQRSWSVWI--GKAGRHFGIIRGWTKFLAEHGLRVGDAYKFELIEN 101
                       333.34459***************..999999*************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1321107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1221106IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-726113IPR003340B3 DNA binding domain
CDDcd100173.49E-1133102No hitNo description
PfamPF023621.1E-944102IPR003340B3 DNA binding domain
PROSITE profilePS5086310.71551112IPR003340B3 DNA binding domain
Gene3DG3DSA:3.40.50.11109.6E-55154486IPR013830SGNH hydrolase-type esterase domain
SuperFamilySSF522662.02E-6159195IPR013830SGNH hydrolase-type esterase domain
CDDcd018372.65E-95160485No hitNo description
PfamPF006571.0E-8160481IPR001087GDSL lipase/esterase
SuperFamilySSF522662.02E-6236412IPR013830SGNH hydrolase-type esterase domain
SuperFamilySSF522662.02E-6458484IPR013830SGNH hydrolase-type esterase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKKPSNTSLL NAQVVTSTSG DDHHPCFIST VKPYCFTKAL LSNGLMNRKC EMVLKDEAQR  60
SWSVWIGKAG RHFGIIRGWT KFLAEHGLRV GDAYKFELIE NGEIPTAQFH CKYSEKVAKR  120
EEQVVLILLV IFTVFRLKID AKKLQIDGKR RLMKCKFDKI YQLGDSVSDT GNCIRESYCG  180
SHSSCAKSPY GINFFHKPTG RCSNGLLIID FLALESGLPL LNPYKDKSAT FRHGANFAVV  240
GATALSAQVM AEKKIVLSFT NSSLDIQLDW MSSHFETTCS PDCPVQLKKS LFLVGHIGGN  300
DIIYGLSQGK TMEELRRLVP HIVHTIIHGV KRVIGFGATR IIVPGTFPKG CSPAILTQFM  360
NNDSSSYDEY HCLKELNNFT IFYNDHLQQA VDEMKKEYTN ITLVYGDYYN AYMWFLQNAV  420
TLGFDKNSLQ KACCGIGGEY NYDKNRKCGA QGVPVCDNPT THFNWDGLHL TQAAYSWLTR  480
WLIDDMLPKL NCHV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-151HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084566.10.0acetylajmalan esterase-like
TrEMBLM1CHN70.0M1CHN7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000676630.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-09B3 family protein