PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002250.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 200aa MW: 23400.1 Da PI: 9.0957 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 10 | 66 | 32 | 93 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + l+++de+ rsW+++l y+ +s ++l+ GW+eF+ an+LkegD ++F+++ +++++ Sopen08g002250.4 10 C--GLIIRDERERSWNLRL-YTHNSIVHILG-GWSEFCVANDLKEGDYMMFEVVV-NGEKPI 66 4..4899************.89999999999.********************765.444455 PP | |||||||
2 | B3 | 49.6 | 7.2e-16 | 99 | 181 | 5 | 91 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +++++ l+ g l+lpk+fa ++g++ ++ +++++de+ rsW++ l r + ++ l++GW +F +a LkegD ++F+++ + +++ Sopen08g002250.4 99 TIKPYCLTYGYLCLPKQFAFRNGLIR-KKCDVIIRDERQRSWNLIL--RPFGTSVCLRGGWDKFREAYCLKEGDRIMFEVVTD-GEK 181 678999999*************9996.5569***************..*******************************8764.333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.224 | 1 | 72 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.043 | 1 | 73 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.31E-10 | 2 | 57 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-13 | 5 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-12 | 7 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-11 | 10 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-17 | 91 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-18 | 92 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.392 | 95 | 189 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-13 | 96 | 190 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 99 | 182 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.41E-13 | 100 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MANGLINKKC GLIIRDERER SWNLRLYTHN SIVHILGGWS EFCVANDLKE GDYMMFEVVV 60 NGEKPIWKFH NKPTPSIKSS RNVEAANHKP ADHSRFVCTI KPYCLTYGYL CLPKQFAFRN 120 GLIRKKCDVI IRDERQRSWN LILRPFGTSV CLRGGWDKFR EAYCLKEGDR IMFEVVTDGE 180 KPIWKFHGKI SWENVSIIEE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-127 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015085510.1 | 1e-146 | B3 domain-containing protein REM17-like isoform X4 | ||||
TrEMBL | A0A0V0HWG4 | 1e-136 | A0A0V0HWG4_SOLCH; Putative B3 domain-containing protein REM14-like (Fragment) | ||||
TrEMBL | A0A3Q7HH76 | 1e-130 | A0A3Q7HH76_SOLLC; Uncharacterized protein | ||||
STRING | XP_009612433.1 | 3e-84 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-20 | B3 family protein |