PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 505aa    MW: 59124.2 Da    PI: 9.9063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-151195599
                      -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      l+p + + ++ l +p  f+ ++ +g  e++ +  +  + g++W vk+  ++ +    l++GWk+F+k+n+L+ gD++vF+++g++ef   v++f+
  Sopen08g002220.1 11 LKPIHKGFKHGLKIPIGFL-KYlKGH-EQH-EHAILRSVGKTWLVKV--NGWR----LEEGWKKFAKENDLQLGDMLVFRHEGDMEF--EVSIFD 94
                      55667777888********.664554.344.45556669********..6666....9***********************999999..999998 PP

                      S CS
                B3 99 k 99
                      +
  Sopen08g002220.1 95 S 95
                      6 PP
2B354.71.8e-17158248599
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++++  +++ l+lpk+fa e+g+ + ++ +++++de+ rsW+++l    +++r+ l +GW+eF  an+L++gD ++F+++  +++++  k++
  Sopen08g002220.1 158 IVKPYCITHSYLRLPKHFAMENGIFN-KKCDVIIRDERQRSWKLRL--ATHDCRVHLLGGWSEFRIANDLNVGDYMMFEVIA-NGEKPIWKFR 246
                       5678999999************6543.4459***************..99999977888********************998.6666788887 PP

                       -S CS
                B3  98 rk 99 
                       +k
  Sopen08g002220.1 247 DK 248
                       76 PP
3B351.12.4e-16280360689
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       ++++ lk++  +lp+ fa+++g+++++   l+++de+ rsW++++  + ++ +++++kGW++F  +n+Lk+gD ++F+++++ e
  Sopen08g002220.1 280 VRPYCLKRNYYRLPRGFARANGLINNKC-GLVIRDERQRSWNLRI--DTYGYGVYIAKGWRKFRAENDLKQGDRMMFEVVSNGE 360
                       6789999**************8886654.799*************..*******************************887533 PP
4B348.61.4e-15392474689
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                       ++++ l ++ l++p k a ++ + +++  +l+++d ++ rsW+vkl  r  ++++ +++GW+eF +an LkegD ++F+++++ ++
  Sopen08g002220.1 392 IRPYCLINDFLYIPTKIAHAYRLTNKKC-DLVIRDdRRERSWNVKL--RSFGNSVCIKGGWREFRDANCLKEGDCIMFEVVSNgEN 474
                       6678888999***********7665444.6777775999*******..999999*************************8876343 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112796IPR003340B3 DNA binding domain
SMARTSM010196.6E-151096IPR003340B3 DNA binding domain
PfamPF023621.3E-121195IPR003340B3 DNA binding domain
CDDcd100172.20E-151194No hitNo description
Gene3DG3DSA:2.40.330.106.1E-18152246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-18153246IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.703154248IPR003340B3 DNA binding domain
SMARTSM010198.8E-17155249IPR003340B3 DNA binding domain
PfamPF023624.4E-15159248IPR003340B3 DNA binding domain
CDDcd100175.07E-12160233No hitNo description
Gene3DG3DSA:2.40.330.108.4E-16273363IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-12275369IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957275369IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-16275368IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-13280361IPR003340B3 DNA binding domain
CDDcd100171.75E-9291354No hitNo description
Gene3DG3DSA:2.40.330.105.4E-17385473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-16386475IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.139387482IPR003340B3 DNA binding domain
SMARTSM010197.8E-13388482IPR003340B3 DNA binding domain
CDDcd100178.02E-12391467No hitNo description
PfamPF023628.3E-14392475IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MKIPPKKPQF LKPIHKGFKH GLKIPIGFLK YLKGHEQHEH AILRSVGKTW LVKVNGWRLE  60
EGWKKFAKEN DLQLGDMLVF RHEGDMEFEV SIFDSSHCDR EYAEYLQQEA GFNNVEETCK  120
KFEFKGKSNL CIMSSGEALP YAEAGTYSPC SRSHFECIVK PYCITHSYLR LPKHFAMENG  180
IFNKKCDVII RDERQRSWKL RLATHDCRVH LLGGWSEFRI ANDLNVGDYM MFEVIANGEK  240
PIWKFRDKPN ANIVSTRKAF PKEEFATCSS FSQSHVECIV RPYCLKRNYY RLPRGFARAN  300
GLINNKCGLV IRDERQRSWN LRIDTYGYGV YIAKGWRKFR AENDLKQGDR MMFEVVSNGE  360
KPIWKYNATN TNKNKNKNKN KPFAQSHFVC IIRPYCLIND FLYIPTKIAH AYRLTNKKCD  420
LVIRDDRRER SWNVKLRSFG NSVCIKGGWR EFRDANCLKE GDCIMFEVVS NGENTTWKYN  480
GKISTKDHKK PIDKDNVKKL VMGKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-173HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085033.10.0B3 domain-containing protein REM17-like isoform X1
TrEMBLM1AKH50.0M1AKH5_SOLTU; Uncharacterized protein
STRINGSolyc08g006240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-44B3 family protein