PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14482.5 Da PI: 8.4851 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.6e-16 | 19 | 99 | 5 | 87 |
-..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++++++++++l +lp +f++++g+ +++ +++l de+ rsW+v l +++ ++ +++GW +F +an +++gD+ F+l+++ Sopen08g002210.1 19 TIKPYAFTKALLvrYLPMDFVKSNGLMSRS--EMILIDEKQRSWSVWL--VRTGHQFGFKRGWTQFRNANSIQVGDTYKFELTNN 99 457888888877778*********998555..8***************..999999*************************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-20 | 8 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-14 | 14 | 107 | No hit | No description |
PROSITE profile | PS50863 | 12.351 | 17 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-13 | 20 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-13 | 25 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSQTPASTSA DTNPHFISTI KPYAFTKALL VRYLPMDFVK SNGLMSRSEM ILIDEKQRSW 60 SVWLVRTGHQ FGFKRGWTQF RNANSIQVGD TYKFELTNNG TIPIAHVNIL EVEGCESPSI 120 TEAIDKII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-122 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888236.1 | 2e-74 | B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | M1AKH6 | 8e-67 | M1AKH6_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g006220.2.1 | 3e-51 | (Solanum lycopersicum) | ||||
STRING | Solyc08g006230.2.1 | 1e-50 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 7e-14 | B3 family protein |