PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 350aa    MW: 40725.9 Da    PI: 9.9858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-1518951199
                      HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       k+ ++ +p  f+ ++  g+++   ++  +  ++g++W vk+  ++ +    l++GWk+F+k+n+L+ gD ++Fk++g++ef   v++f++
  Sopen08g002190.1 18 YKH-CIKIPIGFL-KYlkGLNH---IKQAILRSRGKKWLVKV--NGWR----LEEGWKRFAKENDLQLGDLLIFKHEGDMEF--QVSIFDS 95
                      444.599*****9.66665553...44555677*********..6666....9***********************999999..9999987 PP
2B351.91.4e-16139220588
                       -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                        +++++ ++g l+lpk+fa ++    +k++   l ++de+ rsW+++l    +++++   +GW++F+  n+LkegD ++F+++ + +
  Sopen08g002190.1 139 IVRPYSISKGFLRLPKQFAMDNglF-NKKC--GLLIRDERQRSWNLRL--VTYDSSVCAFGGWSDFCAVNNLKEGDYMMFEVVANgE 220
                       5789999***************532.3345..5999************..77777766777********************887523 PP
3B3512.6e-16258336587
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +++ +++++++l++p +f++++g+ +++  +++l de+ rsW+v l   +   ++ +++GW +F kangL+egD+  F+l+++
  Sopen08g002190.1 258 TIRRYTFTKAILYFPMRFVKSNGLMSRS--EMILVDEKQRSWSVLL--GQMEHHFGIKRGWPQFRKANGLQEGDTYKFELTNN 336
                       4678999***************998555..8***************..88888899***********************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-19498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.028796IPR003340B3 DNA binding domain
CDDcd100172.88E-16894No hitNo description
SMARTSM010193.1E-171096IPR003340B3 DNA binding domain
PfamPF023624.3E-121795IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-18130227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-18132223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308135232IPR003340B3 DNA binding domain
SMARTSM010193.9E-16136230IPR003340B3 DNA binding domain
PfamPF023622.3E-14139221IPR003340B3 DNA binding domain
CDDcd100171.06E-12145214No hitNo description
Gene3DG3DSA:2.40.330.107.8E-19247341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-19250343IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-13253346No hitNo description
PROSITE profilePS5086312.901254347IPR003340B3 DNA binding domain
SMARTSM010195.4E-13255348IPR003340B3 DNA binding domain
PfamPF023621.3E-14258338IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKIASKKPRF FKPIQPGYKH CIKIPIGFLK YLKGLNHIKQ AILRSRGKKW LVKVNGWRLE  60
EGWKRFAKEN DLQLGDLLIF KHEGDMEFQV SIFDSSHCDR EYAEYLQEEE GKYVEATSKK  120
VEKEAATHSS WGQSHFECIV RPYSISKGFL RLPKQFAMDN GLFNKKCGLL IRDERQRSWN  180
LRLVTYDSSV CAFGGWSDFC AVNNLKEGDY MMFEVVANGE KPIWKFHYLR HKTSDMTTPI  240
SQTPASTSAD ANPHFISTIR RYTFTKAILY FPMRFVKSNG LMSRSEMILV DEKQRSWSVL  300
LGQMEHHFGI KRGWPQFRKA NGLQEGDTYK FELTNNGTIP IIHMSKYSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-169HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084058.10.0putative B3 domain-containing protein REM15
TrEMBLA0A2G2UZA40.0A0A2G2UZA4_CAPBA; Uncharacterized protein
STRINGXP_009614320.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-56B3 family protein