PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002180.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 401aa    MW: 46430.4 Da    PI: 9.0995
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-1519941399
                      TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      ++++++p  f+ ++ +g   ++ +  l  + +++W+vk+  ++++    l++GW+eFvk+++L+ g +++F+++g++ef   v vf++
  Sopen08g002180.1 19 KQQITIPIGFF-KYlKG---QGNEYALLRRASKKWSVKV--NGRR----LEDGWEEFVKDHDLQLGNVLIFRHEGDMEF--EVAVFDS 94
                      56799*****9.56343...56789**************..8888....************************999999..8888876 PP
2B354.91.6e-17162248596
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++++ l++ +l++pk+fa+e+ + +++  +++++d + rsW++ +    +++ +++++GW eF + + LkegD+++F+ ++ +++++ +++
  Sopen08g002180.1 162 TIRPYCLSKYCLCIPKQFAQENRLRNRK-CEIIVRD-EQRSWTFGV--HTNGKNTFIGSGWHEFSRTKCLKEGDILMFEIVS-NGETPIFRF 248
                       56788899999***********888655.59**999.679******..88888899***********************887.555577766 PP
3B346.28.2e-15303387795
                       .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++++l+   ++lp  fa+++g+  ++  +l+++de+ rsW++ l  +  + ++ ++kGW++F +ang+++gD+  F+l+++ ++ ++v+
  Sopen08g002180.1 303 KPYTLRFPVMYLPIAFAKSNGLLDKC--ELIIMDEKRRSWSMCL-GQIDKYHFGIKKGWRKFIEANGVQVGDTYKFELINN-GTIPLVH 387
                       55666666799*********988666..7***************.34444458899**********************984.4445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-19397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19497IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562795IPR003340B3 DNA binding domain
CDDcd100172.81E-12893No hitNo description
SMARTSM010196.4E-151095IPR003340B3 DNA binding domain
PfamPF023623.7E-112093IPR003340B3 DNA binding domain
CDDcd100173.23E-15152250No hitNo description
Gene3DG3DSA:2.40.330.104.9E-19156248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18157248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632158251IPR003340B3 DNA binding domain
SMARTSM010199.6E-15159252IPR003340B3 DNA binding domain
PfamPF023623.4E-15162249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18291388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-19293389IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-15296390No hitNo description
PROSITE profilePS5086312.534297391IPR003340B3 DNA binding domain
SMARTSM010191.6E-14298392IPR003340B3 DNA binding domain
PfamPF023623.8E-13303387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKIPPKKPHF LKPILPGCKQ QITIPIGFFK YLKGQGNEYA LLRRASKKWS VKVNGRRLED  60
GWEEFVKDHD LQLGNVLIFR HEGDMEFEVA VFDSSCCERE YEQGVHVHGR KEEEACIVEE  120
SSKKLKSKEK PKRKIKKSGK GFSNVKAAYK DKHLSRSHFI CTIRPYCLSK YCLCIPKQFA  180
QENRLRNRKC EIIVRDEQRS WTFGVHTNGK NTFIGSGWHE FSRTKCLKEG DILMFEIVSN  240
GETPIFRFHD LRESPFLRDE VKNKDLDAER MSDEDAMLET SDVTTPKSQE AADANPHFIS  300
TIKPYTLRFP VMYLPIAFAK SNGLLDKCEL IIMDEKRRSW SMCLGQIDKY HFGIKKGWRK  360
FIEANGVQVG DTYKFELINN GTIPLVHFHC KYDDAGDGKG N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-178HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085028.10.0B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A3Q7HK020.0A0A3Q7HK02_SOLLC; Uncharacterized protein
STRINGSolyc08g006210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-52B3 family protein