PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen08g002170.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 158aa MW: 18041.8 Da PI: 10.2232 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.1e-16 | 57 | 142 | 5 | 93 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++++ ++ l++p fa+++g ++ ++++l+de+ r W v+l s+ + + GW++F +an++++gD++ F+l+++++ ++v Sopen08g002170.3 57 IIKPYSIFKHFLYIPLAFAKSNGWM-NRRFEMILMDEQQRLWPVRL--GPVSDDhIGIHIGWQKFKEANDVQVGDICRFELINNEK-KPV 142 55777778888***********654.4679****************..55555548899**********************98644.455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-20 | 48 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-19 | 48 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.19E-19 | 52 | 147 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 53 | 148 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-13 | 53 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 56 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MRRNASRQPE GKKINLDAKS VSTEATGVKI KTSFETAPKA LPASLSANDA SPYFISIIKP 60 YSIFKHFLYI PLAFAKSNGW MNRRFEMILM DEQQRLWPVR LGPVSDDHIG IHIGWQKFKE 120 ANDVQVGDIC RFELINNEKK PVAYFHRIYS GKDAKQSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-130 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774575.1 | 1e-113 | B3 domain-containing protein REM17-like isoform X2 | ||||
TrEMBL | M1AKH1 | 1e-102 | M1AKH1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024673 | 4e-98 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 1e-11 | B3 family protein |