PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002170.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 513aa    MW: 59569.8 Da    PI: 9.9323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002170.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-131696999
                      HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +k+g + +p  f+ ++ +g   e+++  +  + g++W++kl  + ++   + +++W +Fv++n+L+ gD +vF+++g++ef   v vf++
  Sopen08g002170.2 16 PGFKNG-IKIPIGFL-KYlKGY--EHIKRAVLKRGGKKWRIKL--NEHR---FEESNWGKFVEENDLQLGDLLVFRHEGNMEF--EVYVFDS 96
                      556666.99*****9.564555..4567788899*********..8887...789***********************99999..8888876 PP
2B344.23.4e-14146221987
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       + l+++ ++lp kfa+++g+++++   l+++de+ rsW++kl    + +++++++ W e  +an++kegD ++Fk++ +
  Sopen08g002170.2 146 YCLSKCYFRLPGKFARANGLINKK-CSLIIRDEKRRSWSLKL--YTSYSQVYIGGRWAELRDANDIKEGDHITFKVVAN 221
                       67899*************888544.58***************..66667889***********************7754 PP
3B342.31.4e-13266353496
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++s++l+++ l++p +fa+ +g+k+ ++ t+t++d + rsW++kl    ++  + + + W +F+    LkegD ++F+  + +++++ +k+
  Sopen08g002170.2 266 CIMKSYYLSKCFLRVPVSFARLNGLKN-RTCTITIRD-KRRSWTFKL--YARGVNTCIVGEWHKFCIVSCLKEGDYLMFEILD-NGEKPILKF 353
                       5689****************9999885.5669**999.88*******..555555667779*******************665.566667666 PP
4B347.92.4e-15412497593
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +++++  ++ l++p  fa+++g   ++ ++++l+de+ r W v+l     s+  + +  GW++F +an++++gD++ F+l+++++ ++v
  Sopen08g002170.2 412 IIKPYSIFKHFLYIPLAFAKSNGWM-NRRFEMILMDEQQRLWPVRL--GPVSDDhIGIHIGWQKFKEANDVQVGDICRFELINNEK-KPV 497
                       45777777888***********654.4679****************..55555548899**********************98644.355 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-18399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-195103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125797IPR003340B3 DNA binding domain
CDDcd100173.12E-14895No hitNo description
SMARTSM010191.1E-131097IPR003340B3 DNA binding domain
PfamPF023621.7E-101895IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-13134228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-15137236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8138232IPR003340B3 DNA binding domain
SMARTSM010192.3E-8138232IPR003340B3 DNA binding domain
CDDcd100174.24E-12144217No hitNo description
PfamPF023623.2E-12145222IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-16260353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-16260354IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-14262355No hitNo description
PROSITE profilePS5086310.08263356IPR003340B3 DNA binding domain
SMARTSM010192.0E-15264357IPR003340B3 DNA binding domain
PfamPF023626.6E-12267354IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-18403501IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-18403501IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-16407502No hitNo description
PROSITE profilePS5086311.984408503IPR003340B3 DNA binding domain
SMARTSM010191.5E-13408504IPR003340B3 DNA binding domain
PfamPF023623.8E-14411501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE  60
ESNWGKFVEE NDLQLGDLLV FRHEGNMEFE VYVFDSSQCD REYAEYLQEE GGGGRAQTVE  120
EISKEFEYKE ATTRNQSHVV CKVRGYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR  180
SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGKMPIWEFH TNVTEKSKRN  240
IMSSHEAFCN IEAAKDNPLS HPHFVCIMKS YYLSKCFLRV PVSFARLNGL KNRTCTITIR  300
DKRRSWTFKL YARGVNTCIV GEWHKFCIVS CLKEGDYLMF EILDNGEKPI LKFHDMRRNA  360
SRQPEGKKIN LDAKSVSTEA TGVKIKTSFE TAPKALPASL SANDASPYFI SIIKPYSIFK  420
HFLYIPLAFA KSNGWMNRRF EMILMDEQQR LWPVRLGPVS DDHIGIHIGW QKFKEANDVQ  480
VGDICRFELI NNEKKPVAYF HRIYSGKDAK QSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-179HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085026.10.0B3 domain-containing protein REM8-like isoform X1
TrEMBLM1AKH20.0M1AKH2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246730.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-44B3 family protein