PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g001190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 528aa    MW: 57711.7 Da    PI: 4.964
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g001190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36421332102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sws ++nsfvv+d+ efak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Sopen08g001190.1  42 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 125
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Sopen08g001190.1 126 KSISRRKP 133
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-4035126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3737131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6538131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEPNSYGSGK AAVGDGVGVG VGAPMLQTAP APIPSANAPP PFLVKTYDMV DDPSTDKIVS  60
WSPTNNSFVV WDPPEFAKDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKSISR RKPAHGHAQQ QQQPHGHAQQ QMQPPGHSAS VGACVEVGKF GLEEEVERLK  180
RDKNVLMQEL VRLRQQQQAT DNQLQGMVQR LQGMELRQQQ MMSFLAKAVN SPGFLAQFVQ  240
QQNESNKRIA EGSKKRRIKQ DIESQDPSVT PADGQIVKYQ PGINEAAKAM LRELSKLDSS  300
PRLDNFSNSP ESFLIGDGSP QSNASSGRVS GVTLQEVPPT SGKPLLNTAS AIAGQSLLPA  360
TSEMQSSHLG TCSEIINNQL SNIIPLVGGE DLHPGSLSAS DMIMPELSQL QGILPENNTD  420
VIGCDSFMDT SAVEGKMGLD IIGSLSPGAD IDWQSGLLDE IEEFPSVGDP FWEKFLQSPS  480
SPDAAMDDDI SNTSETKPQI NGWDKTQNME HLTEQMGATN IKQQKHMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-29161314129Heat shock factor protein 1
5d5v_B5e-29161314129Heat shock factor protein 1
5d5v_D5e-29161314129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258KKRRIK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX676000.0X67600.1 L.peruvianum Lp-hsf8 mRNA for heat stress transcription factor 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085676.10.0heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLM1BII20.0M1BII2_SOLTU; Uncharacterized protein
STRINGSolyc08g005170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-134heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]