PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g034430.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 428aa MW: 48549.9 Da PI: 8.1903

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g034430.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	436.5	2e-133	50	428	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl....fsev 87 ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r +s++ + ++p et++++ ss++la + +++v Sopen07g034430.1 50 RQLLISCAELISRSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTNHFMTPVETTPTDssSSSSLALIQSsylsLNQV 142 89**************************************************55555666668888887775533333333335668 PP GRAS 88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R ++p+lRiTg g+ + ++l++tg+rLakfA++lg++f+f+ Sopen07g034430.1 143 TPFIRFTQLTANQAILEAINGNhQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFH 230 *****************9899*******************9.899******....********************** PP GRAS 180 vl.vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +l va++ +d ++++ + p+E+la+n+v+ lhrll+++ +l+ +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+eal+yy+a Sopen07g034430.1 231 PLyVANNNHDHdedpsIISSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEALDYYTA 319 74443333323222356667778**************99999999....************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 +fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++ +s+s+ Sopen07g034430.1 320 VFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLGVSSNSF 412 ***************************************************************************************** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW+++pL+s+S+Wr Sopen07g034430.1 413 FLGWQNQPLFSISSWR 428 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.376	23	407	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-131	50	428	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MLGSFGSSSS QSHPHHDEES SDHHQRRRFT ATATTITTTT TTTSPAIQIR QLLISCAELI 60 SRSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP 120 TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ 180 WPPLMQALAD RYPAPTLRIT GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYVANNNHD 240 HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN 300 HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE 360 RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS EGYQLGVSSN SFFLGWQNQP 420 LFSISSWR

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MLGSFGSSSS QSHPHHDEES SDHHQRRRFT ATATTITTTT TTTSPAIQIR QLLISCAELI  60
SRSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP  120
TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ  180
WPPLMQALAD RYPAPTLRIT GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYVANNNHD  240
HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN  300
HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE  360
RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS EGYQLGVSSN SFFLGWQNQP  420
LFSISSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-61	56	427	26	378	Protein SCARECROW
5b3h_A	1e-61	56	427	25	377	Protein SCARECROW
5b3h_D	1e-61	56	427	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ809743	0.0	FJ809743.1 Solanum pennellii chromosome 7 clone C07SpCP018I014.P4G10, complete sequence.
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081866.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-131	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	Q9ZSP2	0.0	Q9ZSP2_SOLLC; Lateral suppressor
STRING	Solyc07g066250.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-127	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]