PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g033770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 167aa    MW: 18814.4 Da    PI: 8.3612
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g033770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.67.3e-242831194
             NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                       nv+rim+ +lP+naki +++ke++q+  s +i  +t++a ++   e+rkt++++d+lwa+ ++G+  ++  l +yl++yre +
  Sopen07g033770.1  2 ENVTRIMRGILPTNAKINDESKESMQKLGSYYINRITKKAMERM--ERRKTVTAEDILWAMINMGLTIHAGLLAQYLNRYREYN 83
                      69****************************************85..88*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.3E-13160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.75E-17384IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.8E-22385IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MENVTRIMRG ILPTNAKIND ESKESMQKLG SYYINRITKK AMERMERRKT VTAEDILWAM  60
INMGLTIHAG LLAQYLNRYR EYNSVSYYNV RKPNCELNVT SLAASHPNEP VPGYPYPYFP  120
PNVLFYDPVT AALVTSRDFE MAAGNDGSPS EASTSTVMPA YPFGQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-213811797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081597.11e-123nuclear transcription factor Y subunit B-6-like
RefseqXP_015081599.11e-123nuclear transcription factor Y subunit B-6-like
TrEMBLA0A3Q7ICP17e-98A0A3Q7ICP1_SOLLC; Uncharacterized protein
STRINGSolyc07g065570.1.14e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14746510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-23nuclear factor Y, subunit B6