PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g033470.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 417aa    MW: 46121.3 Da    PI: 7.4097
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g033470.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-3163120260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Sopen07g033470.3  63 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 120
                       8****************************************.***************85 PP

2WRKY106.31.6e-33238296159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Sopen07g033470.3 238 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 296
                       59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2654121IPR003657WRKY domain
PROSITE profilePS5081122.35557121IPR003657WRKY domain
SuperFamilySSF1182901.1E-2457121IPR003657WRKY domain
SMARTSM007743.4E-3362120IPR003657WRKY domain
PfamPF031065.6E-2463119IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37223298IPR003657WRKY domain
SuperFamilySSF1182901.57E-29230298IPR003657WRKY domain
PROSITE profilePS5081138.595233298IPR003657WRKY domain
SMARTSM007749.0E-39238297IPR003657WRKY domain
PfamPF031063.6E-26239296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
METSKELSLS APINVDASSK EESLYEPINV DAMNPRGQSS ASMQGSHADH KDVLSVTSER  60
SSDDGYNWRK YGQKLVKGSE FPRSYYKCTY PNCEVKKIFE RSPEGQITEI VYKGSHDHPK  120
PQLSRRFSPG ALMSVQEDKC EKEACFRGQE VYVEDKFNTN VQTSKTEPSS TPVSPQQADT  180
DGLEGAGSQM HGTNDDMDED DQFAKRRKMD GGMDITPVIK PIREPRVVVQ TVSEVDILDD  240
GYKWRKYGQK VVRGNPNPRS YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPAA  300
KNNNHEMTGS SPVTGNSRIR AGETNSLSLD LGVGTGYRLD NGNNGQLHTL HHQVQVSRSG  360
MMLVQPAAVA ARYGIVHSGM SRFGAIDNRV QGPSFETLPL QPSTQSLQNY GKILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3763299878Probable WRKY transcription factor 4
2lex_A1e-3763299878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082104.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-118WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3Q7HI870.0A0A3Q7HI87_SOLLC; Uncharacterized protein
STRINGSolyc07g065260.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-121WRKY family protein