PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g033470.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 596aa    MW: 65017.3 Da    PI: 7.4793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g033470.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31242299260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Sopen07g033470.2 242 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 299
                       8****************************************.***************85 PP
2WRKY105.62.6e-33417475159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Sopen07g033470.2 417 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 475
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-26234300IPR003657WRKY domain
SuperFamilySSF1182901.83E-24236300IPR003657WRKY domain
PROSITE profilePS5081122.355236300IPR003657WRKY domain
SMARTSM007743.4E-33241299IPR003657WRKY domain
PfamPF031069.3E-24242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37402477IPR003657WRKY domain
SuperFamilySSF1182902.75E-29409477IPR003657WRKY domain
PROSITE profilePS5081138.595412477IPR003657WRKY domain
SMARTSM007749.0E-39417476IPR003657WRKY domain
PfamPF031066.0E-26418475IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MEDSHSQQQQ LHSTSEQQLR DGTNSSGGFR HNAAGSNGGA KYKLMTPAML PISRSACITI  60
PPGLSPSSFL ESPVLLSNIK AEPSPTTGSF SKFQTVQGSG GAAAFLLTRG YASGNTYIER  120
KASCIEYKYA GGSSSTSGSL ATEHVISTGL NQQQNEPLKE VQDQCHPQLL VPSSLAKHEM  180
ETSKELSLSA PINVDASSKE ESLYEPINVD AMNPRGQSSA SMQGSHADHK DVLSVTSERS  240
SDDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFER SPEGQITEIV YKGSHDHPKP  300
QLSRRFSPGA LMSVQEDKCE KEACFRGQEV YVEDKFNTNV QTSKTEPSST PVSPQQADTD  360
GLEGAGSQMH GTNDDMDEDD QFAKRRKMDG GMDITPVIKP IREPRVVVQT VSEVDILDDG  420
YKWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAK  480
NNNHEMTGSS PVTGNSRIRA GETNSLSLDL GVGTGYRLDN GNNGQLHTLH HQVQVSRSGM  540
MLVQPAAVAA RYGIVHSGMS RFGAIDNRVQ GPSFETLPLQ PSTQSLQNYG KILLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37242478878Probable WRKY transcription factor 4
2lex_A6e-37242478878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111290.0AB711129.1 Solanum tuberosum StWRKY17 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082104.10.0probable WRKY transcription factor 20
TrEMBLM1C0Z40.0M1C0Z4_SOLTU; Uncharacterized protein
STRINGSolyc07g065260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-148WRKY family protein