PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g032140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GeBP | ||||||||
Protein Properties | Length: 224aa MW: 25956.9 Da PI: 3.9802 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 32.6 | 2.2e-10 | 131 | 217 | 12 | 98 |
DUF573 12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++++L+++ d++ sp+ ++ +vk+s ++k+s++ l eKi L k f++ +++ g++p+++++ d++if+ls++iWg+ Sopen07g032140.1 131 NLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 217 489********988777666558999999999998469***********************9..***********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MLPAIGHTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEDE EHMENLGSGN 60 NVNHQNSEEN ESGNQESYDE NHTSWLVVVE EVEDDEEEER RAAEKGKQLM DDEGGISITE 120 LHDEDEDHHL NLAILKAMCD YECIIRNSPQ LSSFNNRLVY VKDSFPDLKM SREALEEKII 180 ALCKNFNDVR EQLGDDPRMD RPIDREIFNL SMIIWGTKEI PRWK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7HF32 | 1e-122 | A0A3Q7HF32_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g064000.1.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17221 | 5 | 5 |